PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0056100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family G2-like
Protein Properties Length: 196aa    MW: 21368.2 Da    PI: 9.3657
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0056100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.85.6e-344498155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprl+Wt++LH+rF+eav+qLGG++kAtPkti++lm+++gLtl+h+kSHLQkYRl
  Spipo6G0056100 44 KPRLKWTQDLHDRFIEAVNQLGGADKATPKTIMKLMGIPGLTLYHLKSHLQKYRL 98
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.8341101IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-314299IPR009057Homeodomain-like
SuperFamilySSF466891.42E-174399IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-244499IPR006447Myb domain, plants
PfamPF002492.6E-104697IPR001005SANT/Myb domain
PfamPF143796.6E-9140160IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MYGHHEGKHG ILTSRAAFHQ DRNLLLQGAN APGDAGLVLS TDAKPRLKWT QDLHDRFIEA  60
VNQLGGADKA TPKTIMKLMG IPGLTLYHLK SHLQKYRLSK NLHTQANNGT SKNASAGRQA  120
EVSGALTGTA VPSPTNKTLQ IGEALQMQIE VQKRLHEQLE NSMDLADHPK YASKEVVSVE  180
DTDWIFSFIG IKPEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-2144100258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-2144100258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-2144100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-2144100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-2144100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-2144100157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-2144100258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-2144100258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-2144100258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-2144100258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-2144100258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-2144100258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026665294.14e-76myb-related protein 2-like isoform X3
SwissprotQ9SQQ91e-59PHL9_ARATH; Myb-related protein 2
TrEMBLA0A1D1Z6814e-82A0A1D1Z681_9ARAE; Myb family transcription factor APL
STRINGXP_008807359.16e-74(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35743879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.14e-62G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]