PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0058200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 240aa    MW: 26322.1 Da    PI: 10.0577
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0058200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP271.81.2e-22108160255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++ GVr+++ +grWvAeIrdp+    krkr++lg+f+taeeAa+a++ a+++l+g
  Spipo6G0058200 108 KFIGVRQRP-WGRWVAEIRDPTR-SsKRKRVWLGTFDTAEEAAAAYDSAALRLKG 160
                     789******.**********854.3478*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.18E-19107170No hitNo description
PfamPF008477.3E-17108160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-30108170IPR001471AP2/ERF domain
SMARTSM003801.1E-35108174IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22108169IPR016177DNA-binding domain
PROSITE profilePS5103224.118108168IPR001471AP2/ERF domain
PRINTSPR003676.1E-10109120IPR001471AP2/ERF domain
PRINTSPR003676.1E-10134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MPVKSSPQDH LARKTSPSET DSGRSEISAG GSPPFQRRTV RIIYNDADAT DSSSSDDGEE  60
TGSEVRCRRM KRRVTEIDIG NSATESRRKR QTSKRRTSHP LVDESQQKFI GVRQRPWGRW  120
VAEIRDPTRS SKRKRVWLGT FDTAEEAAAA YDSAALRLKG PKAATNFPSS KKPTSTISDD  180
KTGNNGSPCF STISSSTAVT TSTTYTKFAT LPIKSQDDLA CEANDALEHP HIESDKKLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18102177881Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17089KRRVTEIDIGNSATESRRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252020.14e-40PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A1D1Z5T52e-59A0A1D1Z5T5_9ARAE; Pathogenesis-related genes transcriptional activator PTI6 (Fragment)
STRINGXP_010252020.12e-39(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15640615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-18cytokinin response factor 4