PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0062100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 465aa    MW: 48514.5 Da    PI: 7.8161
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0062100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.3e-32183240260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDg+nWrKYGqK+vkgse+prsYY+Ct+++Cp+kk+ve++  +++++ei+Y+g+Hnh+k
  Spipo6G0062100 183 DDGFNWRKYGQKVVKGSENPRSYYKCTHPNCPSKKQVETTL-EGQITEIVYKGNHNHPK 240
                     8****************************************.***************85 PP
2WRKY108.72.7e-34335393159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Cts gCpv+k+ver+++dp++v++tYeg+Hnh+
  Spipo6G0062100 335 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSVGCPVRKHVERASNDPRAVITTYEGKHNHD 393
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.009177241IPR003657WRKY domain
SuperFamilySSF1182906.41E-25180241IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-28180241IPR003657WRKY domain
SMARTSM007741.6E-35182240IPR003657WRKY domain
PfamPF031063.8E-25183239IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-38320395IPR003657WRKY domain
SuperFamilySSF1182905.89E-30327395IPR003657WRKY domain
PROSITE profilePS5081138.629330395IPR003657WRKY domain
SMARTSM007742.4E-40335394IPR003657WRKY domain
PfamPF031061.3E-26336393IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MGSASESLGT SANACPAEFS FSSQLPPSFT ELLNGGEDLA GGGRSKVPSA DRDAAGGPKF  60
KSAPPPSLPI SPRPFSPSCF SFLAGLSPTE LLDSPVLLSS SNILASPTTG SFPAGSFDGK  120
AAPPTGHPPE VVKEEDGGAS SDFSFQTEFA GIPPVRRSLK AEPAPEVAQS SGAAAAGGTQ  180
RADDGFNWRK YGQKVVKGSE NPRSYYKCTH PNCPSKKQVE TTLEGQITEI VYKGNHNHPK  240
PQSTRRSSSS LLAPAPLERA DSAVTPEYSS GSFCDEEDAS GGFHRSRPDG GEVDDDGPDA  300
KRGRSGEGEA ASGAGNRSVR EPRVVVQTTS DVDILDDGYR WRKYGQKVVK GNPNPRSYYK  360
CTSVGCPVRK HVERASNDPR AVITTYEGKH NHDLPAGRGG GAAANRPPAD GGGVAVPLRP  420
SATAGPGIQM TASAPFGREK PFTLQMLRPP GNYASHPQDR QGVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-39170396578Probable WRKY transcription factor 4
2lex_A7e-39170396578Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921056.11e-143WRKY transcription factor WRKY24
SwissprotQ6B6R41e-112WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2H3YUQ31e-139A0A2H3YUQ3_PHODC; WRKY transcription factor WRKY24-like
STRINGXP_008804160.11e-139(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.14e-80WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]