PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0064500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 56aa    MW: 6082.88 Da    PI: 8.2455
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0064500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.7e-131554141
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                     +++W++eEde l +++ q+G  +Wk I++ +  gRt+  c+
   Spipo6G0064500 15 KKKWSPEEDEALRRLIGQHGACNWKFISASIS-GRTDILCR 54
                     689*****************************.****9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0181055IPR017930Myb domain
SuperFamilySSF466893.3E-111254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-131454IPR009057Homeodomain-like
PfamPF002495.5E-111554IPR001005SANT/Myb domain
CDDcd001671.21E-91755No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 56 aa     Download sequence    Send to blast
MDGTEGKEGG HPATKKKWSP EEDEALRRLI GQHGACNWKF ISASISGRTD ILCRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.19e-11myb domain protein r1