PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0065100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Trihelix
Protein Properties Length: 223aa    MW: 25983.2 Da    PI: 8.4705
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0065100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.91.8e-25384186
        trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                    +W+ +e+++L++ r e+++++ ++k++k+lW++vs++m+ergf+r+p qCk+kw+nl +ryk  +++e++      +++p++d+++
  Spipo6G0065100  3 QWSYEETMELLASRAELDRSFVETKRNKHLWAAVSSRMEERGFRRTPDQCKCKWKNLVTRYKGSEATEGDA----DRQFPFYDDMK 84
                    7********************************************************************95....5689*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.107160IPR017877Myb-like domain
PfamPF138371.7E-21386No hitNo description
Gene3DG3DSA:1.10.10.601.3E-4359IPR009057Homeodomain-like
CDDcd122034.28E-19367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAQWSYEETM ELLASRAELD RSFVETKRNK HLWAAVSSRM EERGFRRTPD QCKCKWKNLV  60
TRYKGSEATE GDADRQFPFY DDMKRIFSAR VENLMAENWA EARRGDEQEI RKKRKDSGGA  120
AAGSSDGGSS SKQVEIALME LMRWQTQAEA MRVRASEERE AERRDKEMEC RMAMESLAVE  180
KAVVDQGWRQ REEERWVREE TRARRWDGLV SALLERLGRK GS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A3e-13480784DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110115RKKRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417513.14e-56PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLA0A0S3RUB88e-55A0A0S3RUB8_PHAAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.14e-36Trihelix family protein