PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo6G0070100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

C2H2

Protein Properties

Length: 162aa MW: 17760.2 Da PI: 8.3121

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo6G0070100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.4e-05	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg Fs L H+r+H Spipo6G0070100 81 HECPICGLEFSMGQALGGHMRRH 103 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.17E-8	38	103	No hit	No description
Pfam	PF13912	6.4E-11	40	64	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.577	40	67	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.9	40	62	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	42	62	IPR007087	Zinc finger, C2H2
Pfam	PF13912	5.6E-12	80	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.058	81	103	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.556	81	108	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	83	103	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MKRARSEEEG EEEGTAVANV LMLLSTGEEA HRPRHNGRLF GCKTCNRQFA SFQALGGHRA 60 SHKKPRLPGE RLAQAGKPRV HECPICGLEF SMGQALGGHM RRHRAAAESF AQRYVEKRPG 120 GDKCADSPCL DLDLNTFPSE KEVDLHPLNL TLGLTMVGCF H*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010922390.1	7e-46	zinc finger protein ZAT11
TrEMBL	A0A426ZJ92	4e-43	A0A426ZJ92_ENSVE; Uncharacterized protein
STRING	XP_008788081.1	1e-43	(Phoenix dactylifera)
STRING	XP_008795640.1	1e-43	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP501	37	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	9e-32	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Spipo6G0070100