PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0072200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 641aa    MW: 71055.4 Da    PI: 9.7707
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0072200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07542591147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av+qlG+g+W+ +  +     k+Rt  ++k++w ++
   Spipo6G0072200 542 RRPFSVSEVEALVHAVEQLGTGRWRDVKICAFdsaKHRTYVDLKDKWKTL 591
                      678999************************99***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.29E-6345430IPR029071Ubiquitin-related domain
PROSITE profilePS500539.156351421IPR000626Ubiquitin domain
PROSITE profilePS5129413.736537596IPR017930Myb domain
SMARTSM007171.2E-6541594IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-9542592IPR009057Homeodomain-like
SuperFamilySSF466896.82E-15543624IPR009057Homeodomain-like
CDDcd116608.46E-16543593No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MVLQKRLGYE FNGYQVPNVP RGSRSTRGRR CVRKKVVENE MCAFELLASV AGELLLEKES  60
SPVQSDTITG GTNPMFPKDK VKEEQDDGLN SYEVELRDQQ SCDHGSRASK IGFQGQEHEC  120
IFSECLHPSS IVIISDPSEK ATFAEESVFS RNKSEFARSP RPAQGKFSFK VHSPPPPGSY  180
RGKVEDRISI EASPKYSSDM EYAAGTADYE KTSSYNQTCN ITSKPFRPQR IVDRRIRKLL  240
ASKFWKVGPT LLKDGEFSDK DEDVKPLFYS RKMCYKRQRT QKFSFKRKKL FQRGSVSSRD  300
LPYNSERLSC SPEMHIKGEA SSSETAVHGG NGTSSSTGAQ KFAFDSDDYH VKLSIKSFKV  360
PELFIEIPET ATVGSLKRTV MEAVTAILGG GLRIGVHLQG KKVRDDSKTL LQAGISHSDE  420
LDSLGFTLEP NSLQSPKPLI SSNEDARLLP ICDSPEPLKR LPPIAVTGGE SSPSRPRPPL  480
AAADPSRAGS PRRAAATPSA ERQSPPDSKA LVAVPAADAE ALAVFPLHGK SRRSETGQRR  540
VRRPFSVSEV EALVHAVEQL GTGRWRDVKI CAFDSAKHRT YVDLKDKWKT LVHTARISPQ  600
RRRGEPVPQE LLDRVLSAHA YWSQQQAKPD LTMILSPPSP V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-535266281103Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232238DRRIRKL
2275289KRQRTQKFSFKRKKL
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784600.10.0telomere repeat-binding protein 2
SwissprotQ6R0E31e-116TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A1D1ZJ310.0A0A1D1ZJ31_9ARAE; Telomere repeat-binding protein 5
STRINGXP_008784600.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5245714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-52TRF-like 2