PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0006000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 69aa    MW: 7367.43 Da    PI: 8.4948
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0006000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.87.9e-083168654
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     e+Er+RR++++  f+ Lr+l+ k            ++L  A++YI++L
  Spipo7G0006000 31 LEAERKRRAKLKGQFFALRSLISKE-----------STLAGAIDYIQEL 68
                    589*******************998...........89*******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-82968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-53068IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-63268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-73268No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MGATNHDCAG ELVAGLLASA IAENVYNSKN LEAERKRRAK LKGQFFALRS LISKESTLAG  60
AIDYIQEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-