PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo7G0015400

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

HD-ZIP

Protein Properties

Length: 735aa MW: 80687.5 Da PI: 5.579

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo7G0015400	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.2	7.9e-20	81	136	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++++e++F+++++p+ ++r+eL+++lgL+ q+k+WFqN+R+++k Spipo7G0015400 81 KKRYHRHTQHQIQAMESFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMK 136 688999***********************************************999 PP
2	START	202.7	1.6e-63	260	479	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 la +a++el++ a +++p+W s e n+de+l+ f+++ + + ea+r++++v+m+ a+lve l+d++ +W+ + +a+tle Spipo7G0015400 260 LAVSAMEELMRVARVGQPLWIPSLdgnaEVMNEDEYLRGFSRGVAstnfgLKAEASRETVIVIMNNANLVEMLMDVN-KWSMIFSsivsRAATLE 353 7889******************9999999*****8876699**************************.**99999** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171 v+s+g galq+m+ae+q+++plvp Rd+ fvRy++q+++g w++vdvSvd+ q+ p + R++++pSg+li++++ng+skvtwvehv+ Spipo7G0015400 354 VLSTGvagsynGALQVMTAEFQVPTPLVPtRDSQFVRYCKQHEDGIWAVVDVSVDNLQPGP----MLRCRRRPSGCLIQEMPNGYSKVTWVEHVE 444 ********************************************************9....8************************* PP --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++r +h +++slv+sgla+gak+wv+ l+rqce+ Spipo7G0015400 445 ADDRAVHRIYKSLVSSGLAFGAKRWVSILDRQCER 479 *******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.3E-21	61	136	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.25E-18	73	138	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.795	78	138	IPR001356	Homeobox domain
SMART	SM00389	2.2E-19	79	142	IPR001356	Homeobox domain
CDD	cd00086	6.99E-19	81	139	No hit	No description
Pfam	PF00046	1.8E-17	81	136	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	113	136	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.814	250	482	IPR002913	START domain
SuperFamily	SSF55961	3.98E-35	252	481	No hit	No description
CDD	cd08875	2.78E-122	254	478	No hit	No description
SMART	SM00234	5.2E-56	259	479	IPR002913	START domain
Pfam	PF01852	5.0E-53	260	479	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	3.8E-6	326	463	IPR023393	START-like domain
SuperFamily	SSF55961	3.16E-23	498	724	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009845	Biological Process	seed germination
GO:0009913	Biological Process	epidermal cell differentiation
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0048825	Biological Process	cotyledon development
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
MPAGVMVPAR HAGARSSGAA VYASTSALSL SQFQQQMDLP PLIVANEIPR VREDELESKS 60 GSENAECNSG EEEEAGRNPK KKRYHRHTQH QIQAMESFFK ECPHPDDKQR KELSRELGLE 120 PLQIKFWFQN KRTQMKTQHE RHENQQLRNE NDKLRAENIR YREALSNTSC PNCGGQTTPG 180 EMSFDEQQLR IENVRLREEI DRMSSIAAKY IGRPPGSNPF LPPPLTPETF DMYGPGDILR 240 APAGLSAGEV SLDKPMVIQL AVSAMEELMR VARVGQPLWI PSLDGNAEVM NEDEYLRGFS 300 RGVASTNFGL KAEASRETVI VIMNNANLVE MLMDVNKWSM IFSSIVSRAA TLEVLSTGVA 360 GSYNGALQVM TAEFQVPTPL VPTRDSQFVR YCKQHEDGIW AVVDVSVDNL QPGPMLRCRR 420 RPSGCLIQEM PNGYSKVTWV EHVEADDRAV HRIYKSLVSS GLAFGAKRWV SILDRQCERL 480 ASVMASSFPS GEVSVITTQD GRRSMLKLAE RMVISFCSGV GASIAHQWTT LSGTCGDDVR 540 VMTRKSVDDP GRPLGIVLSA ATSFWLPVSP HKVFNFLRNE NTRSEWDILS NGGEVQEMAH 600 IANGRDEGNC VSLLRVNSVN SNQSNMLILQ ESCTDPSGSY VIYAPVDLVS MNAVLNGGDP 660 DYVALLPSGF AILPEGPQGM ENGATGSLLT VAFQILVDSQ PNAKLSLGSV ATVDSLIACT 720 IERIKGSVLG DLAQ*

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

MPAGVMVPAR HAGARSSGAA VYASTSALSL SQFQQQMDLP PLIVANEIPR VREDELESKS  60
GSENAECNSG EEEEAGRNPK KKRYHRHTQH QIQAMESFFK ECPHPDDKQR KELSRELGLE  120
PLQIKFWFQN KRTQMKTQHE RHENQQLRNE NDKLRAENIR YREALSNTSC PNCGGQTTPG  180
EMSFDEQQLR IENVRLREEI DRMSSIAAKY IGRPPGSNPF LPPPLTPETF DMYGPGDILR  240
APAGLSAGEV SLDKPMVIQL AVSAMEELMR VARVGQPLWI PSLDGNAEVM NEDEYLRGFS  300
RGVASTNFGL KAEASRETVI VIMNNANLVE MLMDVNKWSM IFSSIVSRAA TLEVLSTGVA  360
GSYNGALQVM TAEFQVPTPL VPTRDSQFVR YCKQHEDGIW AVVDVSVDNL QPGPMLRCRR  420
RPSGCLIQEM PNGYSKVTWV EHVEADDRAV HRIYKSLVSS GLAFGAKRWV SILDRQCERL  480
ASVMASSFPS GEVSVITTQD GRRSMLKLAE RMVISFCSGV GASIAHQWTT LSGTCGDDVR  540
VMTRKSVDDP GRPLGIVLSA ATSFWLPVSP HKVFNFLRNE NTRSEWDILS NGGEVQEMAH  600
IANGRDEGNC VSLLRVNSVN SNQSNMLILQ ESCTDPSGSY VIYAPVDLVS MNAVLNGGDP  660
DYVALLPSGF AILPEGPQGM ENGATGSLLT VAFQILVDSQ PNAKLSLGSV ATVDSLIACT  720
IERIKGSVLG DLAQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010908855.1	0.0	homeobox-leucine zipper protein ROC2
Swissprot	Q0J9X2	0.0	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	A0A2I0B7E8	0.0	A0A2I0B7E8_9ASPA; Homeobox-leucine zipper protein ROC2
STRING	XP_008808987.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP799	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Link Out ? help Back to Top
Phytozome	Spipo7G0015400

Publications ? help Back to Top
Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]