PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0019100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family FAR1
Protein Properties Length: 691aa    MW: 77683.9 Da    PI: 5.5149
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0019100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.36.1e-2482172190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     ++Y+eY+++vGF +r ++ ++s+ +ge+++r+f C+k+g+r +++k  +  ++ +r+etr+gCka +++k+ +dg++++++l + HnHel+
  Spipo7G0019100  82 DYYSEYGRKVGFCIRWDTRTRSRITGETISRRFLCNKQGFRVDRQKVgDLLAKYHREETRCGCKAFMRIKLGSDGQFHISELYNTHNHELV 172
                     59*****************************************999856678889**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-2282172IPR004330FAR1 DNA binding domain
PfamPF105514.2E-25261355IPR018289MULE transposase domain
PROSITE profilePS509669.359541575IPR007527Zinc finger, SWIM-type
PfamPF044340.0013542567IPR007527Zinc finger, SWIM-type
SMARTSM005750.0096550576IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MECDEGPPQG SPIEKSVQPL LDSAGESCAD ESGPGADAFD EEAVSGPAEC EGLLSNGGGT  60
GDDAIPEPKV GMAFESEKAA YDYYSEYGRK VGFCIRWDTR TRSRITGETI SRRFLCNKQG  120
FRVDRQKVGD LLAKYHREET RCGCKAFMRI KLGSDGQFHI SELYNTHNHE LVIPQKVIES  180
KIEKKVAVQP AETDYRNYLR TRGTNPLQRF DAGRLLDYFM GKQAEDPSFF YSFQLDDDER  240
ITNVFWADGK MKADFVRFGD VLCFDTTHRR GDCGQPLALL VGVNHHMQIV LFGAALLCDE  300
TAGSLRWVFR AFIEAMCGKM PGTVFTDGDG ATAEAVELCF PVSSHRLCAW HLYQNALKHL  360
AHAASGFADF DDDLRKCIFD SETEADLLKA WSAMLQKYGL SENAWLQQRF EEREKWAAAY  420
GRTTFSADLN NAWRLDNLSD ELGTYLNSEK DIPIFLAQFD RLLAARRNEE LEANVKMTES  480
LPYAPPIAIL QHGARVYTPA VFKLFMAEYN IGLECFIKNR HFDGSIYILT VEDSRHHEHL  540
VTVNMAQEIL TCSCHKFESD GILCGHIMNC ILHDLRYIPD TYILKRWTRG AGSISSISQA  600
SASVEDPKFS LPKRYNCLAH DFIQLSLRAA EDEDMHNCAM KHKLAMYEEM EKILKEKTSS  660
VRIISSGSMF GGSQARNSAI GEFQFCISCS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1XW620.0A0A1D1XW62_9ARAE; Protein FAR1-RELATED SEQUENCE 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-98FAR1-related sequence 5