PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo7G0022000

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Dof

Protein Properties

Length: 227aa MW: 24614.4 Da PI: 8.6527

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo7G0022000	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.8	5e-38	4	63	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprC s+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Spipo7G0022000 4 MQILRCPRCYSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRAK 63 57899****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-25	1	57	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-33	6	61	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.189	7	61	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	9	45	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MENMQILRCP RCYSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCRKNK 60 RAKKPASSAS NSPPAAPVFP SANSTSRHSH LSSPSVSELF YGNPADAAQL SFPTGSSFEG 120 EDYGIQRQTA VDTTPSLTDL LAENSFTASN PYLSLYTTFQ AQMGSGNSTS LTNIKSERMT 180 TISGHDHCFN WPLAPHQSTP EATLEIEPSL YWNTLAAAGF GGGTLI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003633022.2	6e-42	PREDICTED: dof zinc finger protein DOF1.4
Refseq	XP_007025580.2	7e-42	PREDICTED: dof zinc finger protein DOF1.4
Refseq	XP_022724290.1	5e-42	dof zinc finger protein DOF1.4-like
STRING	VIT_10s0003g00040.t01	1e-41	(Vitis vinifera)
STRING	EOY28202	1e-41	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	8e-31	Dof family protein

Link Out ? help Back to Top
Phytozome	Spipo7G0022000