PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0043600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 191aa    MW: 20406.1 Da    PI: 11.2291
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0043600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.9e-06155177223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +CpdCg++F  + +L+ H+   H
  Spipo7G0043600 155 PCPDCGEMFMKPASLELHQAErH 177
                     6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.806154182IPR007087Zinc finger, C2H2
PROSITE patternPS000280156177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAERKSSRKA HRREDHRKKP EKPPPPPPPS WGAVWGILTC KRRHADVGRA RSRRIGCSGS  60
LRKLKDASRV MHRPVTPSPE ARKKCSTGAG GAVSSSHSSL SSSSLTTGSS SSSSSAGGSF  120
RVLHLRRLSG CYECHTVVDP VNGTGRDSSL RTISPCPDCG EMFMKPASLE LHQAERHAGG  180
SSSAILPPWF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927412.17e-39uncharacterized protein LOC105049460
RefseqXP_029121699.17e-39uncharacterized protein LOC105049460
TrEMBLA0A1D1YET81e-45A0A1D1YET8_9ARAE; Uncharacterized protein ZK353.4
STRINGGSMUA_Achr5P01120_0012e-31(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-13C2H2-like zinc finger protein