PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo7G0049300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 133aa MW: 14804 Da PI: 10.0171

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo7G0049300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1e-09	51	98	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR +i +++ +L++l+P + +k + Ka +L + ++Y+++L+ Spipo7G0049300 51 SHSIAERARRGKISERMRTLQSLVPGC----DKVVGKALMLDEIINYVQYLR 98 8***********************9....555**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-16	45	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.99E-7	45	102	No hit	No description
PROSITE profile	PS50888	15.027	47	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.8E-16	48	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-7	51	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-8	53	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
SSSNLQDADE AKRRKRRKSG PPTKEAAAAA ACGPPAGYIH VRARRGEATD SHSIAERARR 60 GKISERMRTL QSLVPGCDKV VGKALMLDEI INYVQYLRNQ VEFLSFKLAA INHLFFSSYM 120 DLDHLIKSEL VCS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	17	KRRKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007159982.1	1e-47	hypothetical protein PHAVU_002G283100g
Swissprot	Q93W88	7e-45	BH137_ARATH; Transcription factor bHLH137
TrEMBL	V7CSS3	3e-46	V7CSS3_PHAVU; Uncharacterized protein
STRING	XP_007159982.1	5e-47	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2358	37	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	3e-45	bHLH family protein

Link Out ? help Back to Top
Phytozome	Spipo7G0049300

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]