PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0053900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARF
Protein Properties Length: 667aa    MW: 73680.6 Da    PI: 5.9124
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0053900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62e-22117217198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+e+       ++++ +  +l+  d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  Spipo7G0053900 117 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQQPPWQ--ELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RGE 207
                     99****************************975444444..8************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  Spipo7G0053900 208 NGELRVGVRR 217
                     999*****97 PP
2Auxin_resp112.15.3e-37243325183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st+++F+v+Y+Pr+s+seF+v+++k+++a ++k+svGmRfkm+fe+++++err+sGt++gv d+ +++W +S+WrsLk
  Spipo7G0053900 243 ASHAVSTGTIFSVFYKPRTSPSEFMVSLNKYLEAKNHKLSVGMRFKMRFEGDEAPERRFSGTIIGVGDSASSHWADSEWRSLK 325
                     789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.66E-42108246IPR015300DNA-binding pseudobarrel domain
CDDcd100172.25E-20115217No hitNo description
Gene3DG3DSA:2.40.330.101.0E-39115232IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-20117219IPR003340B3 DNA binding domain
PROSITE profilePS5086311.209117219IPR003340B3 DNA binding domain
PfamPF023623.2E-20117217IPR003340B3 DNA binding domain
PfamPF065079.9E-35243325IPR010525Auxin response factor
PROSITE profilePS5174524.319541623IPR000270PB1 domain
SuperFamilySSF542771.96E-10543618No hitNo description
PfamPF023098.5E-8588632IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MGSTPGVTRD ALYRELWHAC AGPLVSVPRK GERVYYFPQG HMEQLKASTN QGLDQQMPLF  60
NLPSKILCRV VHVELQAESE TDEVFAHVTL QPEPDQSEVT SPDPPLPELE RCSVRSFCKT  120
LTASDTSTHG GFSVLRRHAD ECLPPLDMTQ QPPWQELVAS DLHGNEWHFR HIFRGQPRRH  180
LLTTGWSVFV SSKRLVAGDA FIFLRGENGE LRVGVRRLMR QLSNMPSSVI SSHSMHLGVL  240
ATASHAVSTG TIFSVFYKPR TSPSEFMVSL NKYLEAKNHK LSVGMRFKMR FEGDEAPERR  300
FSGTIIGVGD SASSHWADSE WRSLKVQWDE PSSVPRPERV SPWELEPLVS FSSPTAQPAA  360
RNKRARPPVL PTPPELPPAF GLWKAPAEGS QAYAYPGPHR ARESFAAPAA PLLSPKSAPG  420
SGSGASPAVL NNSIYWASRA EAQTDSYSVN KEACEKRQET GSGCRLFGIQ LVESSTVEET  480
SPVTALSEGI REDQPVSCFE LDSDRQSQPS NLNGSDLPAT SSEPERSCLR SPHETQSRQI  540
RSCTKVHMQG MAVGRAVDLT RLEGYDDFFV KLEEMFGIQG ELSGASGKWQ VVFTDDEDDM  600
MLVGDDPWHE FCGMVRKIYI YTSEEARRLA PRPKLSPALP SCEEDEDAEG PGGLDDVPHS  660
SPDGRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.023529359Auxin response factor 1
4ldw_A0.023529359Auxin response factor 1
4ldw_B0.023529359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795276.10.0auxin response factor 7-like isoform X1
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLA0A1D1XYX70.0A0A1D1XYX7_9ARAE; Auxin response factor
STRINGXP_008795276.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]