PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0065200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 220aa    MW: 24383.7 Da    PI: 10.6752
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0065200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-1981131256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+WvAeIr p +   r r++lg++++ae Aa a+++a+ kl+ge
  Spipo7G0065200  81 HYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDSAEAAAYAYDRAAYKLRGE 131
                     8*******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.8E-3180139IPR001471AP2/ERF domain
PfamPF008474.0E-1381131IPR001471AP2/ERF domain
PROSITE profilePS5103223.16981138IPR001471AP2/ERF domain
SMARTSM003802.2E-3481144IPR001471AP2/ERF domain
CDDcd000181.99E-1581140No hitNo description
SuperFamilySSF541711.05E-2281139IPR016177DNA-binding domain
PRINTSPR003677.8E-138293IPR001471AP2/ERF domain
PRINTSPR003677.8E-13120140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGLTGGAAFG ASLSDILLSG SSSALDSVFA AKSPPDQQRR HQALRTSSAV YHYQLEQLQR  60
LMGQRHSSSA AAAWAKKEAK HYRGVRQRHW GKWVAEIRLP QNRMRVWLGT YDSAEAAAYA  120
YDRAAYKLRG EYARLNFPDL RDTSGVAAGC RLGALRSSVD AKIQAIYQRL NRERRSKKKA  180
SEAPSSTVRV EVKRKAEGEC SLAKMPSFDP ELIWQVLAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2178145269ATERF1
3gcc_A1e-2178145269ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924856.12e-57ethylene-responsive transcription factor ERF061
RefseqXP_020685544.19e-58ethylene-responsive transcription factor ERF061
SwissprotO656654e-39ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A4D9AEW64e-61A0A4D9AEW6_SALSN; EREBP-like factor
STRINGXP_008791428.12e-54(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.16e-34ERF family protein