PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0069800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 423aa    MW: 46339.4 Da    PI: 5.7213
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0069800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.31.3e-151158350
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    ie +  r++tf kRr+ i KKA EL  LCd+  +++ f+++g+l +++
  Spipo7G0069800 11 IEGEKHRNTTFMKRRAVIKKKAMELGKLCDIVTLLVCFGPRGQLETWP 58
                    888999*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.077161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-7159IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-18392IPR002100Transcription factor, MADS-box
PfamPF003193.7E-131157IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MVRIKMPLRL IEGEKHRNTT FMKRRAVIKK KAMELGKLCD IVTLLVCFGP RGQLETWPED  60
RQEVRRIIEH YASLNPDDCI KRRYDLTTFF EAHLKRLQAE INRERNAWLD ALPAADSLED  120
LLRSLDAKLA AIGEKICRVE LEDKDESRGN EMEACWGQHL QALEAAPSAD IVPLNAIFVD  180
PQGSLHGVIE DLHKLKPERF GGRDLWGTPH GHHQRDSEMT TPGGLAAHSS PDPYAPPLLL  240
PDNHGFATDM RLLDELLSAD FPTYPAAGTS AAATAEDVFD PTVSFPLSFC RDASLGSGME  300
HLNALPFEHS GYNVPLHHLP AGGDGTMICN EMIYHHNELF GGDLFFHGGE GHRTLAETSW  360
SAASIIPNFP PDACGNNVGA PAVDGRGDGD PSKFLPASTS SPHILSSPLM ELPGKAHAMN  420
GH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16694411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.17e-14AGAMOUS-like 103