PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo8G0015100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

MYB_related

Protein Properties

Length: 819aa MW: 88358.8 Da PI: 6.6238

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo8G0015100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.2	7.8e-08	53	95	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I +++ + +q++++++ + Spipo8G0015100 53 AWTRQEEESFFNALRQVGKN-FEKITCRVQ-SKNKEQVRHYYYRL 95 6***************99.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.83E-10	44	100	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.073	49	100	IPR017884	SANT domain
SMART	SM00717	5.4E-5	50	98	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-5	53	95	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-5	53	102	IPR009057	Homeodomain-like
CDD	cd00167	1.76E-5	53	96	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence Send to blast
MPPQSEANSG APPNPPSENI SNKGGGDVDT TFSSATVATP QKPVKKPTRQ WAAWTRQEEE 60 SFFNALRQVG KNFEKITCRV QSKNKEQVRH YYYRLVRRMN KLLGPGFSLD AKNSKDTNAA 120 MLRWWSLLEK YSCTASKLHL KPRRFKTFIE TLAQQLLKDR NRSRRKRPYQ GENCSIPMSA 180 ESIFSKPPGH DIHMVKLVFV DSQNSQKLGN TKMASSTKRG ASAPVNVGKG EVSVMKTVNQ 240 KRRAVCGTAS SAYKKWEKAA IAGVSLVADA AEHLERTSND KNGGTDMLPP SNCTTSGKAY 300 TGFSGDFAQP LASTIPEGLC SQPPITETNM QPPMKLKLQL FPIDEVTRKA LERDERNPHL 360 ELTLSARKRI SSILEHLNRK WGNSSIASGE LMLFPYSVQQ DNISCCPRWT LKDSAASAGD 420 VYAVVGSPAI FRLRYGWFSS LEHQSATAQI PSNIQPLGSC AQTTCAEEED ASPCSYPGKP 480 VNKDLAVERT PAATQMPDQP ASDLKFNSTS LGAAASPPDI QSLGFADGLR VPKSKDVEPL 540 RQRVALPKLR VADGGDDRAH RRGDAAAAVS AGEWADSLTN ISVCDLLSEA SRDAETCHNN 600 SAWLGASLQH ISLSCDSFDA AIAGLISRHQ DSLNPPRGAS LASILDAEET CDEFSFHKVL 660 AVDQQNGPAP AGVSAGSSGQ IAPAGSSGYQ GFIKDSPAAV EHSDNPQGED DMDSAAPSDD 720 ELTSDSKPDP ARSCELTDFY WPDSLGPLDL DVPPARYQGQ ELLFGDAASL SGLSRLIASS 780 LDAFQNCSFF GSEKKESNAA GEAQEAPPFL DQKAGLES*

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence Send to blast

MPPQSEANSG APPNPPSENI SNKGGGDVDT TFSSATVATP QKPVKKPTRQ WAAWTRQEEE  60
SFFNALRQVG KNFEKITCRV QSKNKEQVRH YYYRLVRRMN KLLGPGFSLD AKNSKDTNAA  120
MLRWWSLLEK YSCTASKLHL KPRRFKTFIE TLAQQLLKDR NRSRRKRPYQ GENCSIPMSA  180
ESIFSKPPGH DIHMVKLVFV DSQNSQKLGN TKMASSTKRG ASAPVNVGKG EVSVMKTVNQ  240
KRRAVCGTAS SAYKKWEKAA IAGVSLVADA AEHLERTSND KNGGTDMLPP SNCTTSGKAY  300
TGFSGDFAQP LASTIPEGLC SQPPITETNM QPPMKLKLQL FPIDEVTRKA LERDERNPHL  360
ELTLSARKRI SSILEHLNRK WGNSSIASGE LMLFPYSVQQ DNISCCPRWT LKDSAASAGD  420
VYAVVGSPAI FRLRYGWFSS LEHQSATAQI PSNIQPLGSC AQTTCAEEED ASPCSYPGKP  480
VNKDLAVERT PAATQMPDQP ASDLKFNSTS LGAAASPPDI QSLGFADGLR VPKSKDVEPL  540
RQRVALPKLR VADGGDDRAH RRGDAAAAVS AGEWADSLTN ISVCDLLSEA SRDAETCHNN  600
SAWLGASLQH ISLSCDSFDA AIAGLISRHQ DSLNPPRGAS LASILDAEET CDEFSFHKVL  660
AVDQQNGPAP AGVSAGSSGQ IAPAGSSGYQ GFIKDSPAAV EHSDNPQGED DMDSAAPSDD  720
ELTSDSKPDP ARSCELTDFY WPDSLGPLDL DVPPARYQGQ ELLFGDAASL SGLSRLIASS  780
LDAFQNCSFF GSEKKESNAA GEAQEAPPFL DQKAGLES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010923251.1	0.0	TSL-kinase interacting protein 1
Refseq	XP_019705927.1	0.0	TSL-kinase interacting protein 1
Refseq	XP_019705942.1	0.0	TSL-kinase interacting protein 1
Refseq	XP_019705958.1	0.0	TSL-kinase interacting protein 1
Refseq	XP_019705966.1	0.0	TSL-kinase interacting protein 1
Refseq	XP_019705975.1	0.0	TSL-kinase interacting protein 1
Refseq	XP_019705993.1	0.0	TSL-kinase interacting protein 1
Refseq	XP_029121969.1	0.0	TSL-kinase interacting protein 1
TrEMBL	A0A1D1XDC8	0.0	A0A1D1XDC8_9ARAE; TSL-kinase interacting protein 1 (Fragment)
STRING	XP_008791198.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5478	36	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	0.0	TSL-kinase interacting protein 1

Link Out ? help Back to Top
Phytozome	Spipo8G0015100