PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0020700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 130aa    MW: 15439 Da    PI: 10.6587
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0020700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.99.9e-173271443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    e++ +r  t+ kRr gi+KKAeEL +LCd++ +viif ++
  Spipo8G0020700 32 EDDARRRETLKKRRSGIIKKAEELHILCDVQTCVIIFNPN 71
                    8999*********************************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.532171IPR002100Transcription factor, MADS-box
SMARTSM004329.9E-182180IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-2223110IPR002100Transcription factor, MADS-box
CDDcd002661.14E-2223101No hitNo description
PRINTSPR004047.2E-122343IPR002100Transcription factor, MADS-box
PfamPF003196.7E-163272IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-124358IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-125879IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MYPPFPPLPQ AQDRRTGGAF IPRKKIKIRW LEDDARRRET LKKRRSGIIK KAEELHILCD  60
VQTCVIIFNP NEDQPEVFPR VENAVEICRR FKQLPEFNRA NLMRTNVQFI HAENQIRQWE  120
MVDKKSKKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12237RKKIKIRWLEDDARRR
22244RKKIKIRWLEDDARRRETLKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-16AGAMOUS-like 96