PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0021400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GRAS
Protein Properties Length: 461aa    MW: 49739.8 Da    PI: 7.214
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0021400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.28e-108734523374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..........sseelaalklfsev 87 
                      lLl+cAeav+ + l++aq lL ++sel+sp+g++ +R+aayf+eA++ar+++s  ++y++l++ +++              ++ ++a+++f+ +
  Spipo8G0021400  73 GLLLRCAEAVAMDRLAEAQMLLPEISELSSPYGSSPERVAAYFAEAIHARIVSSRIGVYSSLSAAPSTAALpfyrklilvqNQKIAQAFQVFNAI 167
                     58************************************************************99999977789889998866777788899**** PP

            GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                     sP++kf+h+taNqaI +a+egee vH+iD+di+qGlQWp L++ LasR  ++  s+RiTgvgs    s e l +tg+rL++fA++lg+ fef++l
  Spipo8G0021400 168 SPFVKFAHFTANQAIFQALEGEESVHVIDLDIMQGLQWPGLFHILASRHgHKIRSIRITGVGS----SLELLDATGRRLSDFAAALGLAFEFHPL 258
                     *************************************************55667*********....9*************************** PP

            GRAS 182 vakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl. 271
                      +k  +  +++ +r++p    +E+++Vn+++  h l+d ++s        ++l++ l+Pk+vv+veq++ h ++ Fl+rf+eal+yysa+fd+l 
  Spipo8G0021400 259 EVKIGHITDPSVFRWQPsdsrREVTVVNWMH--HCLYDVTGSDLG----AVRLLQALRPKLVVIVEQDLTH-AGGFLQRFVEALHYYSAMFDALg 346
                     99999999********99999*********9..888888888888....9*********************.889*******************7 PP

            GRAS 272 eaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls.ekaakqaklllrkvksdgyrveeesgslvlgW 362
                     ea +++++   eer  vEr+llg ei+n+va  g +r+ + +  e+W+e+le+aGF+ v+l    aa+qa lll + + +gy++ ee g+l lgW
  Spipo8G0021400 347 EAAAAAAAsgeEERCQVERQLLGTEIRNIVAVGGPKRTGEVK-IERWSEKLERAGFRMVNLAgGPAAAQAGLLLGMLPCKGYTLVEEGGCLKLGW 440
                     665444445779************************998887.*****************9625799**************************** PP

            GRAS 363 kdrpLvsvSaWr 374
                     kd +L+++SaW+
  Spipo8G0021400 441 KDLSLLTASAWQ 452
                     ***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.23245431IPR005202Transcription factor GRAS
PfamPF035142.8E-10573452IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MKAKRYDHAG AGSSTSPSAS AASGEEDGNR RTPKRPNRQS ELAAVAGGSE LGAAEEAREV  60
RDWGESVGLR LLGLLLRCAE AVAMDRLAEA QMLLPEISEL SSPYGSSPER VAAYFAEAIH  120
ARIVSSRIGV YSSLSAAPST AALPFYRKLI LVQNQKIAQA FQVFNAISPF VKFAHFTANQ  180
AIFQALEGEE SVHVIDLDIM QGLQWPGLFH ILASRHGHKI RSIRITGVGS SLELLDATGR  240
RLSDFAAALG LAFEFHPLEV KIGHITDPSV FRWQPSDSRR EVTVVNWMHH CLYDVTGSDL  300
GAVRLLQALR PKLVVIVEQD LTHAGGFLQR FVEALHYYSA MFDALGEAAA AAAASGEEER  360
CQVERQLLGT EIRNIVAVGG PKRTGEVKIE RWSEKLERAG FRMVNLAGGP AAAQAGLLLG  420
MLPCKGYTLV EEGGCLKLGW KDLSLLTASA WQPHPAGGTR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1477745325380Protein SCARECROW
5b3h_A1e-1477745324379Protein SCARECROW
5b3h_D1e-1477745324379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936712.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-151SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2H3XMQ40.0A0A2H3XMQ4_PHODC; LOW QUALITY PROTEIN: scarecrow-like protein 23
TrEMBLA0A2H3YJU90.0A0A2H3YJU9_PHODC; LOW QUALITY PROTEIN: scarecrow-like protein 23
STRINGXP_008799890.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-129GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]