PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0021500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 447aa    MW: 47896.3 Da    PI: 7.1328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0021500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.1e-13275320454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YIk+L
  Spipo8G0021500 275 SHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVTYIKEL 320
                     89************************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-3538217IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.295271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-18271336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.40E-15275324No hitNo description
Gene3DG3DSA:4.10.280.101.2E-17275335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10275320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-16277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDGLMYSSTP SIETFVHPHL FSPAIGTTFP MQPTQLPLKH RLQLLIQTLP ECWSYAIFWR  60
VYTADRLPFL SWGDGHLRSG GGGADGSRTS SSSNSSNNNN NSDHFLFNDD KKKVNLLGAG  120
EEVVTDVEWF YLVSQARSFG AGAADHAVLA RAFSTGNHVW LSGPHELQIY GCDRCREALL  180
HGVSTMVCIP VGDGVLELAS SEIVGEDWGA LHQVKTLLGG GHGSNVMVAS PAASAKPMKK  240
EVAMAALEAE NSDSEDRKPK KRARRVGATG ETPASHVEAE RQRREKLNHR FYALRSVVPN  300
VSRMDKASLL ADAVTYIKEL REKVDQLEVD LKQCKKLPTK PAAAAAMAGA AAAAASSSGG  360
GDGEMEVAVR LVEGDAMVRV TSPEDASHPA ARLMAALREL DMKVHHASVS VVRGMMVQDV  420
VARAPAGVHS EESLKAAMVA NLARNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A2e-25721413227Transcription factor MYC3
4ywc_A2e-25721413227Transcription factor MYC3
4ywc_B2e-25721413227Transcription factor MYC3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256264RKPKKRARR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1XT201e-134A0A1D1XT20_9ARAE; Transcription factor bHLH14 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-59bHLH family protein