PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo8G0023100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

M-type_MADS

Protein Properties

Length: 146aa MW: 17145 Da PI: 10.0472

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo8G0023100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.2	1.9e-12	32	67	4	41
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 e++ +r t+ kRr gi+KKAeEL + Cd+ v++ fs Spipo8G0023100 32 EDDARRGATLKKRRSGIIKKAEELRIFCDTYVLI--FS 67 8999**************************8864..55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.175	21	66	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.0E-11	21	78	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.53E-16	23	108	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.37E-17	23	101	No hit	No description
PRINTS	PR00404	5.1E-7	23	43	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.2E-11	32	69	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.1E-7	43	58	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MTQILKLKDL ARDRRSGRIF IPRKKIKIQW LEDDARRGAT LKKRRSGIIK KAEELRIFCD 60 TYVLIFSPNE DQPEVFPIVE QAVEMCRRFK QLPEFSRANL MLTNMQYIQV EYQIGDMGRK 120 CFARGDGMIQ GMIEERQTGW NDLQT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	44	RKKIKIQWLEDDARRGATLKKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP363	36	202

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06500.1	4e-13	AGAMOUS-like 96

Link Out ? help Back to Top
Phytozome	Spipo8G0023100