PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0026100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NF-YA
Protein Properties Length: 167aa    MW: 17846.9 Da    PI: 9.3028
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0026100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.39e-3266119458
       CBFB_NFYA   4 lYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +YVNaKQy++Il+RRq+Rak+e+e+kl  ksrkpylheSRh hA +R+RgsgGrF
  Spipo8G0026100  66 IYVNAKQYHGILRRRQSRAKAESENKL-VKSRKPYLHESRHLHATKRARGSGGRF 119
                     9**************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.7E-3361122IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.51662122IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-226587IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-2766119IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068606787IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.4E-2296119IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
LISSATDFRL CFLSSCKAHA AYPYPDPYYG TVIAAYGGQA VMLPQLIGIH PAGAGQSPAD  60
AMEGLIYVNA KQYHGILRRR QSRAKAESEN KLVKSRKPYL HESRHLHATK RARGSGGRFL  120
TSKGEKTKTD EDVSDDSSQP RAGDDAGSNQ SAPVDKGASA AAPSDEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-2162123162NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417055.16e-51PREDICTED: nuclear transcription factor Y subunit A-7
SwissprotQ84JP15e-39NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A1D1XNK23e-59A0A1D1XNK2_9ARAE; Nuclear transcription factor Y subunit A-7
STRINGGSMUA_Achr9P10300_0013e-50(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65553853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-35nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]