PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo8G0029700

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bZIP

Protein Properties

Length: 166aa MW: 18718.4 Da PI: 9.7659

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo8G0029700	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.6	1.7e-15	79	138	1	60
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +ke kr +r+ +NR++A+ R+RKka++ Le+kv eLe+ N++L ++l++l++e + l+ Spipo8G0029700 79 DKEQKRLKRLLRNRVSAQQARERKKAYLTDLETKVNELEKRNSELEERLSTLQNENQMLR 138 5899***************************************************99776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00041	7.9E-5	78	94	IPR001630	cAMP response element binding (CREB) protein
SMART	SM00338	4.2E-16	79	143	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.4E-14	80	139	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.518	81	144	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.94E-13	83	139	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.3E-16	83	139	No hit	No description
CDD	cd14704	3.67E-16	84	135	No hit	No description
PROSITE pattern	PS00036	0	86	101	IPR004827	Basic-leucine zipper domain
PRINTS	PR00041	7.9E-5	96	116	IPR001630	cAMP response element binding (CREB) protein
PRINTS	PR00041	7.9E-5	116	133	IPR001630	cAMP response element binding (CREB) protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MQEQGTSSFQ SSSDRSSSSA AHQTEVNGGL ESDDEIRRVP DFGGETAAGP STSGPRQDRA 60 RASSAEAGQQ RKRGRNPADK EQKRLKRLLR NRVSAQQARE RKKAYLTDLE TKVNELEKRN 120 SELEERLSTL QNENQMLRHI CNSFHPENAT QGDWMKARDR DRESF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024925020.1	3e-54	transcription factor HY5-like isoform X1
Swissprot	Q9SM50	8e-52	HY5_SOLLC; Transcription factor HY5
TrEMBL	A0A1D1Z7S2	2e-55	A0A1D1Z7S2_9ARAE; Transcription factor HY5
STRING	PGSC0003DMT400053576	9e-51	(Solanum tuberosum)
STRING	XP_010110356.1	1e-50	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1408	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	4e-50	bZIP family protein

Link Out ? help Back to Top
Phytozome	Spipo8G0029700

Publications ? help Back to Top
Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]