PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo8G0031100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

CPP

Protein Properties

Length: 876aa MW: 94601.8 Da PI: 4.9071

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo8G0031100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.4	4.5e-16	714	751	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YC+Cfaag++C++ C+C++C N+ Spipo8G0031100 714 CKRCNCKKSKCLKLYCDCFAAGVYCTDACTCQGCLNRP 751 79**********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.2E-15	712	753	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	20.079	713	809	IPR005172	CRC domain
Pfam	PF03638	4.5E-12	715	750	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 876 aa Download sequence Send to blast
MDSPESTIPA PAAPNAAVVS PSGVQESPFF AYVSNLSPIK LSSDVCVPSA IRELSFPSPS 60 PVFTSPHINP VRKDKFLKRS QRLSPESGKF SLGYTGDIRE LLEKTSHYGG ANSQPIMVPC 120 STSTTCEHPT RLQSCSSPSD CVDEFFADPV EDSVNSSALS DFCLDQAIEL GQPSQSGFAS 180 PNKTPKDEPV QFQDCSSSGC IDEILPCQEG DRKANDSFDK FPVVDVVSNS SAEASKEFYP 240 QVGNIKNDEL EIVESPAMAC QAGENPELGI SLIQKNCDQN KDSINVADDG REKNDGQLIP 300 CTKLVAQNAM KYSPSKILAS DLHGFQLAGG HTANSDISVV PESVEDDSRF SKKEKSTIPL 360 DCSDGDYVVL TERVQSMEGD SNSQMQPKSL DVALPDERQL CTSTSLCSTS MNIGVSNEQA 420 CLSSKPQWEG CQLAYAMRRR LEFMHSAGPG TNLESTRNPC NIDERILIAE SPSSSLGLET 480 RNASQNESVG ASGNVLVYSS PELSHFQKNP DPSAHALCEA PLCQHQTAEA NANRFDLSIQ 540 KNGSSSATDP RPAGIGLHLN SVVHAVAKDC DINMQLVDRD LGKDSLTTQL GKELCSSDQN 600 IDDSKGCLPS TSLTSSVSVQ TDVNSHSALV CSSNDKSECD QQKNLDVTAP DYSLSLQYAL 660 ITDPLEICLP PTFVSQVVSP CNVKRTPVGP SISEELNEMS PKKKSKKAPE NDGCKRCNCK 720 KSKCLKLYCD CFAAGVYCTD ACTCQGCLNR PDYVDTVLET RQQIETRNPL AFAPKVVVHD 780 AAASRAYGDD DKHTPASARH KRGCNCKRSH PKLVVLWDAG VKDAKIAMAQ KMVYKKELQL 840 SSAHMKIYQQ SNIFFEKINT LVSTDPKENV TGNGI*

Sequence ? help Back to Top

Protein Sequence Length: 876 aa Download sequence Send to blast

MDSPESTIPA PAAPNAAVVS PSGVQESPFF AYVSNLSPIK LSSDVCVPSA IRELSFPSPS  60
PVFTSPHINP VRKDKFLKRS QRLSPESGKF SLGYTGDIRE LLEKTSHYGG ANSQPIMVPC  120
STSTTCEHPT RLQSCSSPSD CVDEFFADPV EDSVNSSALS DFCLDQAIEL GQPSQSGFAS  180
PNKTPKDEPV QFQDCSSSGC IDEILPCQEG DRKANDSFDK FPVVDVVSNS SAEASKEFYP  240
QVGNIKNDEL EIVESPAMAC QAGENPELGI SLIQKNCDQN KDSINVADDG REKNDGQLIP  300
CTKLVAQNAM KYSPSKILAS DLHGFQLAGG HTANSDISVV PESVEDDSRF SKKEKSTIPL  360
DCSDGDYVVL TERVQSMEGD SNSQMQPKSL DVALPDERQL CTSTSLCSTS MNIGVSNEQA  420
CLSSKPQWEG CQLAYAMRRR LEFMHSAGPG TNLESTRNPC NIDERILIAE SPSSSLGLET  480
RNASQNESVG ASGNVLVYSS PELSHFQKNP DPSAHALCEA PLCQHQTAEA NANRFDLSIQ  540
KNGSSSATDP RPAGIGLHLN SVVHAVAKDC DINMQLVDRD LGKDSLTTQL GKELCSSDQN  600
IDDSKGCLPS TSLTSSVSVQ TDVNSHSALV CSSNDKSECD QQKNLDVTAP DYSLSLQYAL  660
ITDPLEICLP PTFVSQVVSP CNVKRTPVGP SISEELNEMS PKKKSKKAPE NDGCKRCNCK  720
KSKCLKLYCD CFAAGVYCTD ACTCQGCLNR PDYVDTVLET RQQIETRNPL AFAPKVVVHD  780
AAASRAYGDD DKHTPASARH KRGCNCKRSH PKLVVLWDAG VKDAKIAMAQ KMVYKKELQL  840
SSAHMKIYQQ SNIFFEKINT LVSTDPKENV TGNGI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6147	34	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	5e-42	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	Spipo8G0031100