PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0037900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 370aa    MW: 39798.3 Da    PI: 6.1862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0037900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH246.9e-08250290954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  Spipo8G0037900 250 ARQRRERISERLRVLQRLVPGG-----GKMDTASMLDEAANYLKFL 290
                     69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.021241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-11247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.24E-11247294No hitNo description
SuperFamilySSF474595.37E-13247299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-10249299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-5250290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGSLPPCGAW TNWEEVEAAG ENPLEGSVVD YGVISGKVDL IEAFFSTNEA FRGFDRDRKG  60
KTFDPFGEMV ALRAPPSDST SGMWAAEVSE FQEPPRFSSE PLKLAGGEED GVMTIPSNST  120
NFPKLATIGD ASSGESENHQ GAHRRHKASN LRLKRKERGG ELTAGEGDLY CRISSESGSS  180
TTTEGSFFVE LGSHSEIGKP RAEAEAVAQL KEMIYRAAAL RPVSLDPVGA VERTKRRNVR  240
ISSDPQTVAA RQRRERISER LRVLQRLVPG GGKMDTASML DEAANYLKFL KSQITALQNL  300
DPSRCSSSSS SASSSSPSST SSSSSSSPSY TFAPLSLPLN QFFPMQGFLP KTQIPSEGQP  360
SKGTPFQPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250255RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396652.15e-53PREDICTED: transcription factor bHLH87-like
TrEMBLA0A1D1XMK13e-63A0A1D1XMK1_9ARAE; Transcription factor bHLH87
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.18e-34bHLH family protein