PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0044800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 265aa    MW: 28300.2 Da    PI: 8.4167
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0044800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.52.7e-22130192163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     ++elkr++rkq+NRe+ArrsR+RK+ae+eeL++kv++L aeN aL++e+++l+k +a+l+ e+
  Spipo8G0044800 130 DRELKRQKRKQSNRESARRSRLRKQAETEELAQKVESLVAENLALRSEVSQLSKDSARLRVEN 192
                     689********************************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.3E-15164IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.2E-15123189No hitNo description
SMARTSM003385.7E-20130194IPR004827Basic-leucine zipper domain
PfamPF001703.3E-20131192IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.334132195IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.19E-11133189No hitNo description
CDDcd147027.22E-18135183No hitNo description
PROSITE patternPS000360137152IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGNGEAATPS KAEKASASVP EQSSVHPYPD WVAMQAYYGS GMAMPPQYFG TNVAQAHPYM  60
WAPPTAATQE TPIKSPNNKV MKGSDGLAVS ACNGSDENES GSVADVLSQS ESEGKDSSDG  120
SNKNNVRRDD RELKRQKRKQ SNRESARRSR LRKQAETEEL AQKVESLVAE NLALRSEVSQ  180
LSKDSARLRV ENSALEDKLK EAQSVSTSTK VESGKPASAV TENFLSRISS STSSTRSEPP  240
PPESPAKLRQ LLESSSRAGA AVLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146152RRSRLRK
2146153RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026660933.14e-60G-box-binding factor 3-like isoform X2
TrEMBLA0A3Q0I2318e-59A0A3Q0I231_PHODC; G-box-binding factor 3-like isoform X2
STRINGXP_008791471.11e-56(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.24e-30G-box binding factor 3