PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo8G0047400

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 513aa MW: 54827.5 Da PI: 5.1594

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo8G0047400	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.1	3.1e-13	59	105	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+l+P +K++Ka+ L++++ Ik+L Spipo8G0047400 59 KSHSEAERRRRERINAHLSTLRTLIPGT-----GKMDKAALLTEVISRIKEL 105 58***********************9.....9**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.082	56	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.3E-11	59	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-13	60	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-13	60	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-12	62	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.31E-4	69	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MGSLHFGDFQ LMRGFPEEVV HGGVAAQTAL VFERERVRAP EKPAKSGLTV EPRAAMALKS 60 HSEAERRRRE RINAHLSTLR TLIPGTGKMD KAALLTEVIS RIKELKTSTT EISQGVNVPA 120 DADEVKVEVE VNGTPCGGGG RGFSIKASLC CADRPELLTD LKQTLLALRL RTVKAEISTV 180 GGRVKNDIVL TCERGGAGDY DTECNIFTNN VHQALKSVLE RASSPPDFSA GSPLSGKRRR 240 LSPPSFPADP SLLTDALGEH LKKICEEVAN DFLDPFSEGC IKGPVSDLSL EQDIIANICK 300 KSKVGHNQGP PDVGALISVP SEREAPAIGQ DGSKEACGML NKNTEVILTA EETKGNGLEL 360 KENPAEASTS SSADGALNTV GRISMLSDSS DSTEENESSS KEVVSPAGFS GDEHDSQGEV 420 AGPNMEDEEE FEVLKLDDGW EHAERCNLPQ TAARDVKNRS YKKKLRGMLS SNLYSLRKKN 480 RAPDADLCNA SAISSSLSLL GSGQKVNHDE PS*

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MGSLHFGDFQ LMRGFPEEVV HGGVAAQTAL VFERERVRAP EKPAKSGLTV EPRAAMALKS  60
HSEAERRRRE RINAHLSTLR TLIPGTGKMD KAALLTEVIS RIKELKTSTT EISQGVNVPA  120
DADEVKVEVE VNGTPCGGGG RGFSIKASLC CADRPELLTD LKQTLLALRL RTVKAEISTV  180
GGRVKNDIVL TCERGGAGDY DTECNIFTNN VHQALKSVLE RASSPPDFSA GSPLSGKRRR  240
LSPPSFPADP SLLTDALGEH LKKICEEVAN DFLDPFSEGC IKGPVSDLSL EQDIIANICK  300
KSKVGHNQGP PDVGALISVP SEREAPAIGQ DGSKEACGML NKNTEVILTA EETKGNGLEL  360
KENPAEASTS SSADGALNTV GRISMLSDSS DSTEENESSS KEVVSPAGFS GDEHDSQGEV  420
AGPNMEDEEE FEVLKLDDGW EHAERCNLPQ TAARDVKNRS YKKKLRGMLS SNLYSLRKKN  480
RAPDADLCNA SAISSSLSLL GSGQKVNHDE PS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	69	ERRRRE
2	236	240	KRRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11011	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Spipo8G0047400