PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0048600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARF
Protein Properties Length: 519aa    MW: 54116.6 Da    PI: 6.3233
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0048600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.12.6e-21154240182
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                     f+k+lt sd++++g +++p++ ae++       +  ++ s++++ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD + +
  Spipo8G0048600 154 FCKTLTASDTSTHGGFSVPRRAAEDCfpqldyrQ--QRPSQEVVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVHNKKLVSGDALRL 240
                     99****************************9743..345679*******************************************9866 PP
2Auxin_resp24.21.4e-092883115982
      Auxin_resp  59 lsGtvvgvsdldpvrWpnSkWrsL 82 
                     ++G ++gv d dpvrWp+S+Wr+L
  Spipo8G0048600 288 YTGSIIGVGDQDPVRWPGSQWRCL 311
                     79*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-34146240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-38148242IPR015300DNA-binding pseudobarrel domain
CDDcd100172.99E-20152238No hitNo description
SMARTSM010193.6E-14154246IPR003340B3 DNA binding domain
PROSITE profilePS5086310.969154256IPR003340B3 DNA binding domain
PfamPF023622.5E-19154240IPR003340B3 DNA binding domain
PfamPF065073.5E-6288311IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MMTGFDLNTF QEEGAAEVGA EASLAAPHAP SPSSVCLELW RACAGPPISL PQKGSLVVYL  60
PQGHLELAAA DGGGSGGDGG PAGAAFPSGV PPHVFCRVVD INLHAEASTD DVYAQLSLMP  120
ETEESLQQLQ EGEGEEGSPE AGAAAKPPAA THMFCKTLTA SDTSTHGGFS VPRRAAEDCF  180
PQLDYRQQRP SQEVVAKDLH GTEWRFRHIY RGQPRRHLLT TGWSAFVHNK KLVSGDALRL  240
GIRRAAQLKS GAPHSGLGGQ TPNVGDLSDV VNALSSRTAF HIRYNPSYTG SIIGVGDQDP  300
VRWPGSQWRC LRVRWDDGME ISGRSRVSPW EIEPSGPAPG PGCSSGPPPK RNKLALFSAV  360
AGLPAPSSGC PGFGDPAGFQ EGVLQGQEVS GFSAARHDPR PSIGRLSETR RLVPEIVALT  420
APEYAAAGEG SGFGEATVFP KVLQGIAMNS RTYLAALPVF EADLREGNGS LSGGRTGCRL  480
FGFSLVLGGA ALPAGSSSEA QDGTLAKVVG RSCTKIGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A6e-843433418354Auxin response factor 1
4ldw_A6e-843433418354Auxin response factor 1
4ldw_B6e-843433418354Auxin response factor 1
4ldx_A5e-843434318363Auxin response factor 1
4ldx_B5e-843434318363Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505103.11e-144auxin response factor 3 isoform X1
RefseqXP_004505104.11e-144auxin response factor 3 isoform X3
RefseqXP_027191757.11e-144auxin response factor 3 isoform X2
SwissprotQ0JKI91e-123ARFB_ORYSJ; Auxin response factor 2
TrEMBLA0A1D1XHD61e-155A0A1D1XHD6_9ARAE; Auxin response factor
STRINGXP_004505103.11e-143(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-107ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]