PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0051900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family DBB
Protein Properties Length: 293aa    MW: 31348 Da    PI: 5.8484
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0051900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.34.7e-06447542
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  Spipo8G0051900  4 QCNVCEAAEAKVLCCADEAALCLACDEKVHAAnklagkHQRVPL 47
                    7******99*********************66899999999986 PP
2zf-B_box30.86.1e-105491237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg...H 37
                    + +kC+ ++e    +fC +++ llC++C  ++H +   H
  Spipo8G0051900 54 QVPKCDICQEAAGYFFCLEDRALLCQECDISIH-SvnlH 91
                    789*******99********************9.43663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.452147IPR000315B-box-type zinc finger
CDDcd000211.89E-7347No hitNo description
SMARTSM003362.5E-9447IPR000315B-box-type zinc finger
SMARTSM003364.0E-1453100IPR000315B-box-type zinc finger
PROSITE profilePS501198.84553100IPR000315B-box-type zinc finger
PfamPF006432.8E-85491IPR000315B-box-type zinc finger
CDDcd000211.45E-956100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKIQCNVCEA AEAKVLCCAD EAALCLACDE KVHAANKLAG KHQRVPLTAA ASSQVPKCDI  60
CQEAAGYFFC LEDRALLCQE CDISIHSVNL HVSAHRRFLL TGVRVGTEPA GSTLSFAEQQ  120
LSPSLVKSLP KRSSSTTFSG ENKEAVPSQV GWQGNQPDSR APSTGGLLTG GITDWQFDEF  180
FGADYGHNYG FAVNESSKGD SGKLGSSEGS PIYRPACEEL EVDSVSQVPE VQWTVPEIPS  240
PPTASGLNWS RNSWSHPLAD HAAFVPDVCA SSCQDTQRCR QGAGSMKRQR PR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0018862e-31AB001886.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:R2931.
GenBankAK0722312e-31AK072231.1 Oryza sativa Japonica Group cDNA clone:J023001E21, full insert sequence.
GenBankAK1040832e-31AK104083.1 Oryza sativa Japonica Group cDNA clone:001-029-D01, full insert sequence.
GenBankAP0048062e-31AP004806.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0710H01.
GenBankAP0065542e-31AP006554.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0529C07.
GenBankAP0149622e-31AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126142e-31CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794150.11e-115B-box zinc finger protein 22
TrEMBLA0A1D1YGE41e-128A0A1D1YGE4_9ARAE; Putative salt tolerance-like protein At1g78600 (Fragment)
STRINGXP_008794150.11e-114(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.15e-62light-regulated zinc finger protein 1