PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0054900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 149aa    MW: 16153.2 Da    PI: 8.0651
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0054900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.79.3e-172989363
                    XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                    + ++++rk +NRe+ArrsRqRK++ ++ L+  v +L +eN + + +l+  ++++ ++++e+
  Spipo8G0054900 29 DMRKQKRKLSNRESARRSRQRKQKHLDDLTAQVGQLRKENGQIITNLKAVTQQCLAVETEN 89
                    5789**************************************************9998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.1E-162791IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-1128104No hitNo description
PROSITE profilePS5021710.8062992IPR004827Basic-leucine zipper domain
PfamPF001707.7E-133088IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-123084No hitNo description
CDDcd147026.88E-203282No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MASSSGSGTS SGSTLLASSD EDLQLQATDM RKQKRKLSNR ESARRSRQRK QKHLDDLTAQ  60
VGQLRKENGQ IITNLKAVTQ QCLAVETENS VLRAQMTELG GRLHSLGEIL QYVDQGGGFL  120
CEDAFLVNPW TMISASQEPI TAAAIFPC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14349RRSRQRK
24350RRSRQRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275578.22e-43PREDICTED: bZIP transcription factor 11-like
SwissprotC0Z2L52e-34BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A1D1ZBS33e-49A0A1D1ZBS3_9ARAE; Ocs element-binding factor 1 (Fragment)
STRINGAquca_010_00561.17e-45(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44593367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.16e-35G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]