PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo9G0002500

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Nin-like

Protein Properties

Length: 243aa MW: 27535.6 Da PI: 9.3154

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo9G0002500	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	62.7	6.5e-20	133	178	3	48
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 ++++ d+++yF+lp ++AA++L++c T+LK+ R+++++RWPhRk Spipo9G0002500 133 RQLTFTDIAQYFHLPANEAAQKLQICSTALKKVSRKFNLNRWPHRK 178 689******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.06	124	203	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-19	134	179	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEEIDEVFRF LDSPQGKELC ELLSSLLSSD EELPPPPEPT LQQDNVVDSG NGVSPVPITV 60 TWMPFSGADC GRCHLLRDIV HAGGHLNMEQ GSTVHRNTSR ANVYTNVISN QYQKRRVDFI 120 SEGQGSLVRH RIRQLTFTDI AQYFHLPANE AAQKLQICST ALKKVSRKFN LNRWPHRKFI 180 IELRVFRMYG RIRNVHALSV LSDLKLGHYA NILSRCMFTS QVRARRLCGL HLSLFNTPLS 240 PV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	6e-08	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Spipo9G0002500