PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo9G0004500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family BBR-BPC
Protein Properties Length: 254aa    MW: 26503 Da    PI: 9.5239
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo9G0004500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind233.61.5e-7165253122301
       GAGA_bind 122 save.lreeeklealpie..eaaeeakekkkkkkrqrakkpkekkak......kkkkksekskkkvkkesaderskaekksidlvlngvslDest 207
                     +a+  + +++ + a p+   +a++ + +k +k  +++++ + +  ++      + +k++++++++ +++ a  + + e+k+ d +l +v++De t
  Spipo9G0004500  65 TAYShTGDMQVIAAVPVYfcSANDRSAKKGRKGGGASPAAAAAAPTQsprlpkRGRKSGQEPTSQAAAAVAGGELRFEWKDRDAGLRQVAFDELT 159
                     55554556666666665411222222333333333333333332222121111222333334444444444466********************* PP

       GAGA_bind 208 lPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     +P+PvCsCtG++++CYkWG GGWqS+CCt t+S+yPLP  + +r+ R++grKmS+gaf klL++ aa+G+dls+p+DLkdhWAkHGtn ++ti+
  Spipo9G0004500 160 MPPPVCSCTGTPQRCYKWGRGGWQSSCCTPTMSMYPLPFLPVKRHGRVGGRKMSGGAFGKLLSRAAADGHDLSTPLDLKDHWAKHGTNGWITIK 253
                     *********************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.6E-589253IPR010409GAGA-binding transcriptional activator
PfamPF062175.3E-6860253IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MATATSEQDD PTLPSWGPYI AAEGHPHGSG VGTSGGPACP SEPAAASGTE FMQRLNPPPL  60
PLPPTAYSHT GDMQVIAAVP VYFCSANDRS AKKGRKGGGA SPAAAAAAPT QSPRLPKRGR  120
KSGQEPTSQA AAAVAGGELR FEWKDRDAGL RQVAFDELTM PPPVCSCTGT PQRCYKWGRG  180
GWQSSCCTPT MSMYPLPFLP VKRHGRVGGR KMSGGAFGKL LSRAAADGHD LSTPLDLKDH  240
WAKHGTNGWI TIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021659561.16e-66protein BASIC PENTACYSTEINE4-like
RefseqXP_021659562.16e-66protein BASIC PENTACYSTEINE4-like
SwissprotQ5VSA87e-62BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A1D1XZF11e-86A0A1D1XZF1_9ARAE; Barley B recombinant-like protein D
STRINGGRMZM2G118690_P014e-64(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.31e-59basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]