PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo9G0014700

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Nin-like

Protein Properties

Length: 160aa MW: 18150 Da PI: 11.3809

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo9G0014700	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.1	8.3e-19	68	115	3	50
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 k +++ d+s+yF+lp ++AA++L++c T LK+ R++ ++RWPhRk++ Spipo9G0014700 68 KLLTFMDVSQYFHLPAAEAAQKLQICGTSLKKVTRKFLVNRWPHRKVR 115 6799******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.97	57	137	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-17	70	115	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MDYPDDYVLP TGTMKLQGSP IIPIQGGHAV EASQPSHAVE GRIKRRGRKK SRHQIQKTGM 60 AAQRERIKLL TFMDVSQYFH LPAAEAAQKL QICGTSLKKV TRKFLVNRWP HRKVRCQNKN 120 KTKNLRSASK VLNLRRDNED SGPRPDRELG TSRDLRVLV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-08	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Spipo9G0014700