PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo9G0016600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

TCP

Protein Properties

Length: 189aa MW: 20701.5 Da PI: 7.674

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo9G0016600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	87.1	4e-27	42	109	3	70
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 g+kdrhsk+ T +g+RdRRvRls+++a +++dLq++LG+ ++sk ++WLl +a ++i++l+ +++++ Spipo9G0016600 42 GGKDRHSKVTTVRGLRDRRVRLSVPTAVQLYDLQERLGLSQPSKVVDWLLDAARHEIDKLPPLPFPPG 109 78***********************************************************9966654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.907	43	101	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.0E-25	43	103	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MTRDPYEDGR KAEKLTGATP SLRGWAAELG DPRIVRVSRS LGGKDRHSKV TTVRGLRDRR 60 VRLSVPTAVQ LYDLQERLGL SQPSKVVDWL LDAARHEIDK LPPLPFPPGG FFPICPPPPT 120 TAPWHPAESS DLRDPRLGFC QVVEGEELHG FRPPPPMSSS YVGAAAQINN FLMGVSEEHL 180 QSSALHGE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-18	48	102	1	55	Putative transcription factor PCF6
5zkt_B	2e-18	48	102	1	55	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009406310.1	1e-45	PREDICTED: transcription factor TCP5-like
Refseq	XP_018682833.1	1e-45	PREDICTED: transcription factor TCP5-like
Refseq	XP_018682834.1	1e-45	PREDICTED: transcription factor TCP5-like
Refseq	XP_018682835.1	1e-45	PREDICTED: transcription factor TCP5-like
Refseq	XP_018682836.1	1e-45	PREDICTED: transcription factor TCP5-like
Refseq	XP_018682837.1	1e-45	PREDICTED: transcription factor TCP5-like
TrEMBL	A0A1D1YQI4	1e-46	A0A1D1YQI4_9ARAE; Transcription factor TCP5 (Fragment)
STRING	GSMUA_Achr6P27420_001	4e-45	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2490	35	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	3e-38	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Link Out ? help Back to Top
Phytozome	Spipo9G0016600