PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo9G0018900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 105aa    MW: 11333.8 Da    PI: 9.9554
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo9G0018900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.61.2e-332380158
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
                    ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+++k++ers+ d +vv++tYe +Hnh
  Spipo9G0018900 23 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCNARKHIERSSADRNVVITTYERKHNH 80
                    59******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-36983IPR003657WRKY domain
SuperFamilySSF1182901.2E-291583IPR003657WRKY domain
PROSITE profilePS5081136.1731883IPR003657WRKY domain
SMARTSM007741.3E-362382IPR003657WRKY domain
PfamPF031063.6E-262480IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MSKVAVPVEP KIIVQTTSEV DLLDDGYRWR KYGQKVVKGN PNPRSYYKCT SPGCNARKHI  60
ERSSADRNVV ITTYERKHNH GVPGARTGGH GQVTDAAAAA AEGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-381483877Probable WRKY transcription factor 4
2lex_A9e-381483877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022725732.12e-43probable WRKY transcription factor 3
SwissprotQ9ZQ705e-41WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2P5E2316e-44A0A2P5E231_PARAD; WRKY domain containing protein
TrEMBLQ6IEQ12e-43Q6IEQ1_ORYSJ; WRKY transcription factor 30
STRINGGorai.012G186000.11e-42(Gossypium raimondii)
STRINGXP_010044462.13e-42(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-43WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]