PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo9G0028900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family LBD
Protein Properties Length: 201aa    MW: 22201.9 Da    PI: 6.6588
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo9G0028900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.11.4e-3841031100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C + Cv+apyfp ++p++f +v+++FGasnv+ +l++l++ +r++a++sl+yeAe r++dP+yG+vg+i++l+ +l+ ++++++
  Spipo9G0028900   4 PCAACKYLRRRCLPTCVFAPYFPPDKPERFLCVQQVFGASNVSDILNDLDPVHRRQAVDSLLYEAELRLQDPIYGCVGIIFQLEARLRDVRQKIH 98 
                     7********************************************************************************************99 PP

          DUF260  96 llkee 100
                      +k+e
  Spipo9G0028900  99 DAKSE 103
                     98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.7833104IPR004883Lateral organ boundaries, LOB
PfamPF031957.4E-384101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGEPCAACKY LRRRCLPTCV FAPYFPPDKP ERFLCVQQVF GASNVSDILN DLDPVHRRQA  60
VDSLLYEAEL RLQDPIYGCV GIIFQLEARL RDVRQKIHDA KSELNSLNVA NHSVDRNPAR  120
HSRGAATQPR QATDLMRNPG PSTASSSAPQ TVEAQQPLIF LSGLDTQEQT QVLHLMGNGA  180
GSSSNYGVQD EDNSRIQELR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3821049111LOB family transfactor Ramosa2.1
5ly0_B1e-3821049111LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024975609.15e-41LOB domain-containing protein 36-like
RefseqXP_025808846.13e-41LOB domain-containing protein 6-like
SwissprotQ32SG31e-41LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLA0A2T7EDS65e-40A0A2T7EDS6_9POAL; Uncharacterized protein
STRINGSi024114m4e-40(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1968178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.14e-41ASYMMETRIC LEAVES 2-like 1