PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo9G0029500

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

FAR1

Protein Properties

Length: 482aa MW: 53886.4 Da PI: 5.48

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo9G0029500	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.3	2.2e-22	91	179	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +Y++++GF+vr sk ++s +g +++r+fvCs+eg+ e+ + + ++++ ++ +gC a+l+v+++ +g+w+v+k+e eHnH+ Spipo9G0029500 91 FYASYSRHAGFRVRSSKCRRSVGDGAVVCRQFVCSREGFYMERPQGggSGDREEAEVIAGVGCMARLVVRRQPSGRWVVSKFEREHNHD 179 9************************************999998866777788889999**************************6 PP
2	FAR1	79.3	7.2e-25	245	327	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YAk++GF+vr+sk ++ r+g+i++r+fvCskeg+ ++ + ++r+ra tr+gC a+l vkk ++g+w+v+++e+eHnH+ Spipo9G0029500 245 FYYTYAKDMGFTVRISKCRRA-RDGSIVCRRFVCSKEGFYVRKYGR---TKRSRALTRVGCLARLIVKKLDSGVWVVANFEKEHNHP 327 9**************9998.8999*********9998766...99*********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-19	91	179	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.3E-21	245	327	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MSSSMDAELL DSDMGLEYDL HDSDFGDDGL EEGSEEEEDD EAMDEPLIAA RKDGEMIESY 60 DRRELISNEV SSYMEPVEGM EFDSEECARA FYASYSRHAG FRVRSSKCRR SVGDGAVVCR 120 QFVCSREGFY MERPQGGGSG DREEAEVIAG VGCMARLVVR RQPSGRWVVS KFEREHNHDP 180 LENVALRKVD LKPLQVSEMK KMEGSLQQSE SPPEKSAVFA PPCGNPELEP YEGMEFSSEE 240 AARAFYYTYA KDMGFTVRIS KCRRARDGSI VCRRFVCSKE GFYVRKYGRT KRSRALTRVG 300 CLARLIVKKL DSGVWVVANF EKEHNHPPFV QGTELTYEPP KPARRINRGA RLTLESPVLS 360 KPEADLQGSQ SPVSWRFNKL HQEGIKFAEE GSSSVEAFNV AMFALREASQ KVIAAKGGVL 420 RAPQIGSDEQ HSWPNDLGNQ QGPNEGSRPY SLSIFTLIFS AFENGFLRCS APSLRRQKSS 480 G*

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MSSSMDAELL DSDMGLEYDL HDSDFGDDGL EEGSEEEEDD EAMDEPLIAA RKDGEMIESY  60
DRRELISNEV SSYMEPVEGM EFDSEECARA FYASYSRHAG FRVRSSKCRR SVGDGAVVCR  120
QFVCSREGFY MERPQGGGSG DREEAEVIAG VGCMARLVVR RQPSGRWVVS KFEREHNHDP  180
LENVALRKVD LKPLQVSEMK KMEGSLQQSE SPPEKSAVFA PPCGNPELEP YEGMEFSSEE  240
AARAFYYTYA KDMGFTVRIS KCRRARDGSI VCRRFVCSKE GFYVRKYGRT KRSRALTRVG  300
CLARLIVKKL DSGVWVVANF EKEHNHPPFV QGTELTYEPP KPARRINRGA RLTLESPVLS  360
KPEADLQGSQ SPVSWRFNKL HQEGIKFAEE GSSSVEAFNV AMFALREASQ KVIAAKGGVL  420
RAPQIGSDEQ HSWPNDLGNQ QGPNEGSRPY SLSIFTLIFS AFENGFLRCS APSLRRQKSS  480
G*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008778479.1	1e-177	uncharacterized protein LOC103698264
TrEMBL	A0A1D1XJE0	0.0	A0A1D1XJE0_9ARAE; Protein FAR1-RELATED SEQUENCE 7
STRING	XP_008778479.1	1e-177	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	2e-41	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Spipo9G0029500