PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo9G0032600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Trihelix

Protein Properties

Length: 222aa MW: 24941.5 Da PI: 6.5208

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo9G0032600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.6	1.9e-19	107	195	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a++e+ +l+rg+l++ +We+v+ ++ +++ +s +qCk+k +nl+kryk+++++ +++ + s+s++p+f+++e Spipo9G0032600 107 EWSDSAIACLLDAYTEKYVQLNRGNLRGRDWEDVATVVsercDKQKSGKSVEQCKNKVDNLKKRYKAERQRLSSG-NLSVSHWPWFKKME 195 5******************************9998877668889999*********************9.89999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.1E-22	105	197	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
VNSHHCFAST DEDAVAAAPN DFPSQLPEDE DDEGDDGDSN RQRLERKGRG TPGSGTLVGS 60 HPSRPDVKRK DREELSDGGS PYCFNSGGSG KKPRMSSSMD YRKDREEWSD SAIACLLDAY 120 TEKYVQLNRG NLRGRDWEDV ATVVSERCDK QKSGKSVEQC KNKVDNLKKR YKAERQRLSS 180 GNLSVSHWPW FKKMEQIVGN VEKPCLSEKV VFRPTLIPEE W*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020687242.1	7e-75	uncharacterized protein LOC110103038 isoform X1
Refseq	XP_020687243.1	2e-75	uncharacterized protein LOC110103038 isoform X2
TrEMBL	A0A1D1XIL0	1e-105	A0A1D1XIL0_9ARAE; Uridylate kinase (Fragment)
TrEMBL	A0A1D1XKX1	1e-104	A0A1D1XKX1_9ARAE; Uridylate kinase (Fragment)
STRING	XP_008813118.1	4e-71	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1935	34	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	8e-59	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Spipo9G0032600