PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo9G0038600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NF-YB

Protein Properties

Length: 146aa MW: 16139 Da PI: 5.0201

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo9G0038600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	39.2	1.6e-12	13	108	8	96
NF-YB 8 lPianvsrimkkvlPana.......kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 lP + v ri+k l + + k+a e + fi ++++ a+d c++ kr+ i+++d++ al ++ f +++epl+v l+ +r ++ Spipo9G0038600 13 LPRTIVRRIVKDKLSRGGdrdgdgmNVHKEALLAFSESARIFIHYLSATANDICKESKRQIISAEDVFKALEEIEFPEFIEPLRVSLEDFRRKNA 107 66677777777777655411111124667777778899999**************************************************8776 PP NF-YB 96 e 96 + Spipo9G0038600 108 A 108 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.1E-32	12	142	IPR009072	Histone-fold
Pfam	PF00808	4.9E-9	12	83	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	2.18E-23	13	128	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
KGEEGPGAVV EELPRTIVRR IVKDKLSRGG DRDGDGMNVH KEALLAFSES ARIFIHYLSA 60 TANDICKESK RQIISAEDVF KALEEIEFPE FIEPLRVSLE DFRRKNAAKK AESKPRERKR 120 KAEGDAAAAK NGEADGGEGV DDAEEN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	120	RRKNAAKKAESKPRERKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010245113.1	4e-54	PREDICTED: DNA polymerase epsilon subunit 3
TrEMBL	A0A1D1Z1G0	9e-62	A0A1D1Z1G0_9ARAE; DNA polymerase epsilon subunit 3 (Fragment)
STRING	XP_010245113.1	2e-53	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10414	37	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	7e-30	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	Spipo9G0038600