PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo9G0040400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 186aa    MW: 19577.8 Da    PI: 4.5493
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo9G0040400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.2e-14114161755
             AP2   7 rwdkkrgr..WvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     r +++++   W+AeIrdp     +  +r++lg+f+tae Aa a+++a++ ++g
  Spipo9G0040400 114 RVREQKQAcmWAAEIRDP-----HraARVWLGTFDTAEAAALAYDRAALHYRG 161
                     4455333366*******7.....338*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.63898169IPR001471AP2/ERF domain
SMARTSM003803.8E-21115175IPR001471AP2/ERF domain
PfamPF008471.2E-7117161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-24118170IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-16120170IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MCFTVANSGG GGGDFLWSPA WESAEEGPAA ATFEGYCEEK ETEAMVSALT AVVAGEKAVD  60
VLFDSLSSPA PAGYAVYSGG EIKRERDAGP AEQAFPRIYR GSGEFSGVSS SVIRVREQKQ  120
ACMWAAEIRD PHRAARVWLG TFDTAEAAAL AYDRAALHYR GSKAKLNFPE NAGISTLVLS  180
AATLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-141171691063ATERF1
3gcc_A2e-141171691063ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142046.15e-27PREDICTED: ethylene-responsive transcription factor ABR1
TrEMBLA0A0A0KKX41e-25A0A0A0KKX4_CUCSA; Uncharacterized protein
STRINGXP_004160502.12e-26(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-18related to AP2 6