PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo9G0041600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARF
Protein Properties Length: 568aa    MW: 61286.2 Da    PI: 8.3072
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo9G0041600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.71.3e-24114215199
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f k+ltpsd+++ g +++p+ +a+++      ++++  ++l ++d +g++We+++iyr++++r++lt+GW++Fv++++L +gD+vvF   +++ +
  Spipo9G0041600 114 FAKILTPSDANNGGGFSVPRFCADSIfpqldFSVEPPAQMLNVRDVHGKVWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVAGDSVVFI--KNKAG 206
                     89*********************999*****455555669************************************************..7799* PP

                     ..EEEEE-S CS
              B3  91 elvvkvfrk 99 
                     el+++++r+
  Spipo9G0041600 207 ELFIGLRRT 215
                     *****9996 PP
2Auxin_resp70.84.3e-24268350183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+ + +F++vY+Pr+++s+Fvv+   v +al v++s+GmR+km++etedss++++ +Gt + +   +p  +  S+WrsL+
  Spipo9G0041600 268 AASLAELGRPFKIVYYPRVGSSNFVVEKGAVDAALMVSWSAGMRVKMSVETEDSSKTTWfQGTLSCLLR-HPAPFIYSPWRSLE 350
                     677888999**************************************************9****99999.999*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-31106222IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-36108228IPR015300DNA-binding pseudobarrel domain
CDDcd100174.38E-22113210No hitNo description
SMARTSM010192.7E-20114216IPR003340B3 DNA binding domain
PfamPF023629.5E-23114215IPR003340B3 DNA binding domain
PROSITE profilePS5086313.296114216IPR003340B3 DNA binding domain
PfamPF065071.2E-20268349IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MAAAAERRGG LDQSVWEACA GNSAKIPAVG ALVYYFPQGH GEQAYAAPDF SSLSCERGQY  60
LCRVKEIQLL ASEETDEVYS VVGLDPWISV SAPSQDIFSL TEDTGTEKSR ALSFAKILTP  120
SDANNGGGFS VPRFCADSIF PQLDFSVEPP AQMLNVRDVH GKVWEFRHIY RGTPRRHLLT  180
TGWSKFVNSK KLVAGDSVVF IKNKAGELFI GLRRTARSFG PSGSSHAPSH VGSPPAFSAT  240
RLGGNFGSQV GFSRNFRGKV SPEDVVEAAS LAELGRPFKI VYYPRVGSSN FVVEKGAVDA  300
ALMVSWSAGM RVKMSVETED SSKTTWFQGT LSCLLRHPAP FIYSPWRSLE VTWDEPDVFY  360
NVKRVSPWQV ELIPGSPHLA PSPYPLLKRP RAGQSQIQDL LPDGSEKKAL FPFPELPHAA  420
TRSTEACALI NSVSPAGMQG ARHDQLYDFL PAGIYSVSPN VKPRAGNWAP KRNRMPPELN  480
CACALQSENS SPPSKDGVCS RFADLVGGPA GGADPRASSG SFQLFGKTIR TENLATAEAP  540
EAGGDRRVDA VAPYNFSLSK PAEAVPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-67437144388Auxin response factor 5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785886.11e-168auxin response factor 17-like
TrEMBLA0A1D1Y5H61e-171A0A1D1Y5H6_9ARAE; Auxin response factor (Fragment)
STRINGXP_008785886.11e-167(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-126auxin response factor 17