PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo9G0042300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

TCP

Protein Properties

Length: 375aa MW: 38735.1 Da PI: 10.7773

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo9G0042300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	136	3.3e-42	42	177	2	132
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...kaaks 93 a+ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai ++tg+++++a++++ + s+ s++ ss + ++ + Spipo9G0042300 42 AAPKRSSKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGSGTIPANFSSLNVSVRSGGGSSVSapsHRLGF 136 6789*****************************************************************99955555555554555546522233 PP TCP 94 aakskksqksaasalnlak..esrakarararertrekmri 132 +++++++ + aa++ + + +a a+ r+r re+ ++ Spipo9G0042300 137 HHHHHQAAAAAAQMAETLHggAGEPSAEAHMRKRYREDLFK 177 33222222222222222222333344445555566665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.1E-38	47	172	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.093	48	102	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MVPLEGRTLH GGGPSSNNNN NNNSKQTPFM GGGALPGGGA AAAPKRSSKD RHTKVDGRGR 60 RIRMPAACAA RVFQLTRELG HKSDGETIEW LLQQAEPAIV AATGSGTIPA NFSSLNVSVR 120 SGGGSSVSAP SHRLGFHHHH HQAAAAAAQM AETLHGGAGE PSAEAHMRKR YREDLFKEDP 180 QQERGGGAAK SPPSPPPHQS TRQQEAAELR SSAGVVPAAA MWAVATPAPA SGGGAFWMLP 240 VNAPGSSAAT VAAPVSSESS FWTLPTTAGR FRAAAQIQTP LHFISGGMDR PMGAVPVGSM 300 LLQQQQPAAA AAAQHLGIGI SETNMGMLAA LNAYNRTGMS SAAEQNRHQV QPPPPPPSSQ 360 SSERGDEHRR GSHQ*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MVPLEGRTLH GGGPSSNNNN NNNSKQTPFM GGGALPGGGA AAAPKRSSKD RHTKVDGRGR  60
RIRMPAACAA RVFQLTRELG HKSDGETIEW LLQQAEPAIV AATGSGTIPA NFSSLNVSVR  120
SGGGSSVSAP SHRLGFHHHH HQAAAAAAQM AETLHGGAGE PSAEAHMRKR YREDLFKEDP  180
QQERGGGAAK SPPSPPPHQS TRQQEAAELR SSAGVVPAAA MWAVATPAPA SGGGAFWMLP  240
VNAPGSSAAT VAAPVSSESS FWTLPTTAGR FRAAAQIQTP LHFISGGMDR PMGAVPVGSM  300
LLQQQQPAAA AAAQHLGIGI SETNMGMLAA LNAYNRTGMS SAAEQNRHQV QPPPPPPSSQ  360
SSERGDEHRR GSHQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256467.1	6e-92	PREDICTED: transcription factor TCP8
Refseq	XP_010256468.1	6e-92	PREDICTED: transcription factor TCP8
Refseq	XP_010256469.1	6e-92	PREDICTED: transcription factor TCP8
Swissprot	Q9C518	1e-60	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A1U7ZSI5	1e-90	A0A1U7ZSI5_NELNU; transcription factor TCP8
STRING	XP_010256467.1	2e-91	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	4e-39	TCP family protein

Link Out ? help Back to Top
Phytozome	Spipo9G0042300

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]