PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo9G0049100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NAC

Protein Properties

Length: 155aa MW: 18409.8 Da PI: 8.7351

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo9G0049100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166	1.3e-51	16	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 l+pGfrFhPt+eelv +yL++kveg+++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + s+ Spipo9G0049100 16 LMPGFRFHPTEEELVEFYLRRKVEGRPFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSE 109 689*************************.89***********888889************************************* PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkktLvfy+g+apkg++t+W+m+eyrl Spipo9G0049100 110 SSRSIGLKKTLVFYSGKAPKGVRTSWIMNEYRL 142 *****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-55	14	149	IPR003441	NAC domain
PROSITE profile	PS51005	52.941	16	154	IPR003441	NAC domain
Pfam	PF02365	4.3E-26	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MNSREEDDDG HEHDVLMPGF RFHPTEEELV EFYLRRKVEG RPFNVELITF LDLYRYDPWE 60 LPAMAAIGEK EWFFYVPRDR KYRNGDRPNR VTTSGYWKAT GADRMIRSES SRSIGLKKTL 120 VFYSGKAPKG VRTSWIMNEY RLPHHETDRY LKVL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	6	142	7	142	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	6	142	7	142	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	6	142	7	142	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	6	142	7	142	NO APICAL MERISTEM PROTEIN
4dul_A	1e-54	6	142	7	142	NAC domain-containing protein 19
4dul_B	1e-54	6	142	7	142	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022897039.1	9e-99	NAC domain-containing protein 35-like
Refseq	XP_028793227.1	1e-98	NAC domain-containing protein 35-like
Swissprot	Q9ZVP8	9e-92	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A2P5BY54	8e-97	A0A2P5BY54_PARAD; NAC domain containing protein
STRING	XP_008382796.1	6e-97	(Malus domestica)
STRING	XP_009626107.1	1e-96	(Nicotiana tomentosiformis)
STRING	XP_004301581.1	4e-96	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2826	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	3e-94	NAC domain containing protein 35

Link Out ? help Back to Top
Phytozome	Spipo9G0049100

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]