PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo9G0049200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family FAR1
Protein Properties Length: 739aa    MW: 82158.9 Da    PI: 8.0682
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo9G0049200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.53.4e-26110198289
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     fY +YA+++GF+vr+sks +s+ ++++++r+fvCsk+g++++++    +k+rr+r+++r gC+a+++v+++++g+w+v++++leH H+l
  Spipo9G0049200 110 FYVAYAERIGFRVRNSKSFTSRVDETVIMRRFVCSKQGRPTKKDPFdLTKKRRNRVSSREGCRAMFQVNRRENGQWVVSRCVLEHCHPL 198
                     9**************************************99887655899*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.4E-24110198IPR004330FAR1 DNA binding domain
PfamPF105516.9E-19291381IPR018289MULE transposase domain
PfamPF044341.6E-7569604IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.249569605IPR007527Zinc finger, SWIM-type
SMARTSM005750.0012580607IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MEGIDAIGLS MDSVGACKHS EELGIPFAMA SGQFDHVEGV RGAEILDLRT GGEVGRVPVE  60
GAGEGDVAGE AGITGVVAVE VEEEKGWVEQ LPQEPAPGLE FESSDAARAF YVAYAERIGF  120
RVRNSKSFTS RVDETVIMRR FVCSKQGRPT KKDPFDLTKK RRNRVSSREG CRAMFQVNRR  180
ENGQWVVSRC VLEHCHPLGF ASLPSSAFRK KMAKKPWEIL GGGGAGEAQQ NGLGAGGGVA  240
QSLLEYFKRM QVDNPAFFYA IQVDRNNCVA NVFWADARAR MAYSYFGDAV TLDMSCKKNK  300
RIVPFASFTG VNHHRQLIVF GSAFMTDESE GSFTWLFETW LSLMSGRCPA SLITCLDENV  360
EAAAKKVFPT VHHRVCKRDV LSKCKDKLAD VYTMYPDFKG QFKKCVDEPE TDEEFQGLWA  420
SVIGSYGLEK NGWLQYLFSI RHKWVPLYLR SSFFAEICPD QKLESMHKLF QRHSITTTTL  480
RDIVMQFDKA MASQYEKEIQ ADSVTTSTRP VLKTPSPIEK QASDIYTKAV FDVLQEELAE  540
SSGFLMDKTE EGAVSKFRVA HVDDAGRSYL VTYSASENRI SCSCCKFEFA GILCRHAFRV  600
CLAVGMTTLP EDYVLRRWTR NAKSNALLLE HGAALQNSNP KTLSLRCNDL CRDAIRYAEE  660
GVTSAVVYKV AKTALRRAFS EVLAAKKAFY SMGPDFAAGR ASISHWLIEC TVLCSWGVPQ  720
SQRLHVGSLK MGEKRVGI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020245598.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020245599.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2I0W9790.0A0A2I0W979_9ASPA; Protein FAR1-RELATED SEQUENCE 5
STRINGORGLA11G0071600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-140FAR1-related sequence 3