PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF001300030CFD_t1
Common NameTRAES_3BF001300030CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 269aa    MW: 29186.6 Da    PI: 7.2915
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF001300030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.53.7e-25104162258
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnh 58 
                               Dg+ WrKYGqK+++gs++pr YYrC+++  gC ++++v+rs+e+p +++i Y geH++
  TRAES3BF001300030CFD_t1 104 ADGFVWRKYGQKDINGSNHPRLYYRCAFRgeGCAATRRVQRSQEEPAAFVIAYYGEHTC 162
                              6***************************9999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-2594163IPR003657WRKY domain
PROSITE profilePS5081121.82798165IPR003657WRKY domain
SuperFamilySSF1182902.88E-2399163IPR003657WRKY domain
SMARTSM007741.3E-31103164IPR003657WRKY domain
PfamPF031067.6E-24105162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MALATPTAVV LELMTMGQQS AAHLGDLLRA ASPPVRAEHQ ALAAEILRCC DRVIAAVSAG  60
ASDKKRKMTD PGATTCHPPA AAMPSKRRVR GAEAHREVHA DTTADGFVWR KYGQKDINGS  120
NHPRLYYRCA FRGEGCAATR RVQRSQEEPA AFVIAYYGEH TCGAAFSQQR AEPQPPTVVD  180
SGSNAWGVFG AVDRNRGSPL MPSLAAEHDV RRHGEAPRDT SQRWSSPSSS SSYSEVELGA  240
SPVEGFLDGN FDWEWETVVN SLRFGDLLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-151051621068OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186011.11e-167probable WRKY transcription factor 38
TrEMBLW5D4L50.0W5D4L5_WHEAT; Uncharacterized protein
STRINGTraes_3B_D6F86ABC3.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.19e-21WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]