PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF002200030CFD_t1
Common NameTRAES_3BF002200030CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 224aa    MW: 24598.9 Da    PI: 9.6538
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF002200030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-095278127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                             ykt+lC+ + +tG C y d C+FaHg+
  TRAES3BF002200030CFD_t1 52 YKTRLCDKYEATGRCVYEDGCTFAHGR 78
                             9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.0E-154884IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-95082IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3385179IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015178IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-65278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEGECPAAPT RRWAENVIVL SSGRPPRSEE AAVVAGQGQH QRTDAPPEKL YYKTRLCDKY  60
EATGRCVYED GCTFAHGRAE LRPPVPPHAH AVWRRPPDQE HGGRIVYGGG KACHNFRDRG  120
HFGDKLASPH AAAPAPPGHP IRITGDQKLL ADERRSATPP AMPPAARRYA ALGPARAFPP  180
VPAPATRDRL RQMPEEDGGK KPNRLMLMSL RKTSGIYGDW PEQC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101109GGRIVYGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186974.11e-121zinc finger CCCH domain-containing protein 1-like
TrEMBLA0A077RQK81e-162A0A077RQK8_WHEAT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-08C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]