PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF002700090CFD_t1
Common NameTRAES_3BF002700090CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TCP
Protein Properties Length: 280aa    MW: 30354.8 Da    PI: 7.9831
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF002700090CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP967.3e-3053122372
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 
                              g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ +++++++ 
  TRAES3BF002700090CFD_t1  53 GGKDRHSKVKTVKGLRDRRVRLSVQTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPHQV 122
                              78*************************************************************9999922 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.0E-2854117IPR005333Transcription factor, TCP
PROSITE profilePS5136929.66554112IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MMSGNNQHQQ SAAAAAAEEE QELARKHAAA VATSRQWSSQ TESRIVRVSR VFGGKDRHSK  60
VKTVKGLRDR RVRLSVQTAI QLYDLQDRLG LNQPSKVVDW LLNAARHEID KLPPLQFPPH  120
QVDLMDHMMT SSSMPLMPHV DDKFCHFAST LARDGGVKAG ADADGGGAHH NIGRFGYHRF  180
MGLNNNSLGL VNSGMPYNFT GESWNNSSVD QSSGAGSPQV SIAAAAAAHH SAFPSLLSLA  240
PRSHQLVYYS SEADQFPVDD LGSQSLSLSS ARAFHDQTGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2059113155Putative transcription factor PCF6
5zkt_B4e-2059113155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168249.11e-170uncharacterized protein LOC109753738
TrEMBLA0A077RVE90.0A0A077RVE9_WHEAT; Uncharacterized protein
TrEMBLA0A446Q0A90.0A0A446Q0A9_TRITD; Uncharacterized protein
STRINGMLOC_14785.21e-157(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-39TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]