PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF003000030CFD_t1

Common Name

TRAES_3BF003000030CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 332aa MW: 36924.5 Da PI: 8.2252

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF003000030CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2.1e-10	46	86	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L TRAES3BF003000030CFD_t1 46 KTMRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 86 7789************************9877777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.6E-8	42	105	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.496	44	88	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-7	46	86	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.2E-7	46	89	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.4E-8	47	91	No hit	No description
PROSITE pattern	PS00036	0	49	64	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.6E-34	128	203	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MAEASPRTET STDDTDENLM LEPGNAALAV VSDSSDRSRD KNGDQKTMRR LAQNREAARK 60 SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGIFISSSA DQSHSMSGNG ALAFDTEYAR 120 WLEEHNRQVN ELRAAVNAHA GDTELRSVVE KIMSHYDEIF KQKGNAAKAD VFHVLSGMWK 180 TPAERCFLWL GGFRPSELLK LLSTQLEPLT EQQLSGICNL QQSSQQAEDA LSQGMEALQQ 240 SLAETLAGSI GSSGSGSTGN VANYMGQMAM AMGKLGTLEN FLRQADNLRQ QTLQQMQRIL 300 TTRQSARALL VISDYSSRLR ALSSLWLARP KE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X56782	0.0	X56782.1 T.aestivum 1b-c38 gene for HBP-1b (leucine zipper type transcription factor).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164500.1	0.0	transcription factor HBP-1b(c38) isoform X1
Refseq	XP_020164501.1	0.0	transcription factor HBP-1b(c38) isoform X1
Swissprot	P23923	0.0	HBP1B_WHEAT; Transcription factor HBP-1b(c38)
TrEMBL	A0A446NE62	0.0	A0A446NE62_TRITD; Uncharacterized protein
TrEMBL	W5CVU1	0.0	W5CVU1_WHEAT; Uncharacterized protein
STRING	Traes_3B_5CABEBCE5.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-147	TGACG motif-binding factor 6

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]