PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF003800040CFD_t1
Common NameTRAES_3BF003800040CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 296aa    MW: 31644.5 Da    PI: 8.3131
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF003800040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK73.42.8e-233784451
                   RWP-RK  4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51
                             ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rki s
  TRAES3BF003800040CFD_t1 37 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRTHGIVRWPYRKIVS 84
                             6899*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.32421105IPR003035RWP-RK domain
PfamPF020422.5E-213883IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAASAQELPP AEQAPSLALA LVPQPQAQAQ IKPTRVSLSY EEISKLFSLP IAEAASILGV  60
CTSVLKRICR THGIVRWPYR KIVSGKGDDA KNAEREKAMQ LLELSKIAKQ KAISSSGSLA  120
TSSSGAFQGV PKAQQGSAKA GTAIGRQNAP SLSQFSQAKD IPTYMDDFKY GFPSSGLSTE  180
TMKWWGTDSH TETAPAKDDN REGSESTNEA SKGMTDDELD WGADEPEADA DGVAAATDPS  240
AQLCSLRRKA AGDGRRLLNG DTGRVQQLCR LNKRQKIVLA QVFGASLPEH WRSNLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3709800.0AK370980.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2121H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153379.10.0uncharacterized protein LOC109738702
TrEMBLA0A077RR140.0A0A077RR14_WHEAT; Uncharacterized protein
STRINGEMT193030.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67053242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.13e-10RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]