PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF004600010CFD_t1

Common Name

TRAES_3BF004600010CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YB

Protein Properties

Length: 121aa MW: 13510.2 Da PI: 6.9328

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF004600010CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	118.2	3.9e-37	1	78	17	94
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 mk vlP +ak+sk+ake++qec++efi+fvt+eas++c+re+rkt+ngdd+++a++tlG+++y+ +++ yl++yre e TRAES3BF004600010CFD_t1 1 MKDVLPPEAKVSKHAKEVIQECATEFIGFVTGEASERCRRERRKTVNGDDICHAMTTLGLDNYAGAMRRYLQRYREGE 78 89*************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.2E-33	1	81	IPR009072	Histone-fold
SuperFamily	SSF47113	1.84E-25	1	82	IPR009072	Histone-fold
Pfam	PF00808	3.6E-17	1	55	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.7E-14	19	37	No hit	No description
PRINTS	PR00615	1.7E-14	38	56	No hit	No description
PRINTS	PR00615	1.7E-14	57	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MKDVLPPEAK VSKHAKEVIQ ECATEFIGFV TGEASERCRR ERRKTVNGDD ICHAMTTLGL 60 DNYAGAMRRY LQRYREGEEL AAVLNNHSRS PAPPAPGDGM IQIDVWGELS NSRGNEKHGR 120 D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	7e-31	1	76	17	92	Transcription factor HapC (Eurofung)
4g92_B	7e-31	1	76	17	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196190.1	5e-83	transcriptional activator hap3-like
Swissprot	O04027	1e-33	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A077RZV0	6e-86	A0A077RZV0_WHEAT; Uncharacterized protein
STRING	Traes_3B_DBC77FFF1.1	2e-85	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2917	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	5e-36	nuclear factor Y, subunit B4

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]